GgaINT0048002 @ galGal3
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16934965-16935247:-
Coord C1 exon
chr7:16935155-16935247
Coord A exon
chr7:16935046-16935154
Coord C2 exon
chr7:16934965-16935045
Length
109 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCATCTGTTTTGTGTTCCAGGAG
3' ss Score
11.4
Exon sequences
Seq C1 exon
GTCGTGGGGGTGGTTCAGGCAACTTCATGGGTCGTGGAAATTTTGGAGGTGGTGGAGGAAACTTTGGCCGAGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GTAAATTACTGAGATGTTTCTGGGGTGCGATTTCTGCTCTGCTCGTGTCTGTTTTCCTGAGCACGTGCTGAGTATTTAAGCCAATGACCTCATCTGTTTTGTGTTCCAG
Seq C2 exon
GAGGCTATGGGGGTGGTGGTGGCGGTGGTGGGAGCAGAGGAAGCTTTGGGGGTGGTGATGGATACAACGGATTTGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=NA C2=0.736
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGGGGGTGGTTCAGG
R:
ACCAAATCCGTTGTATCCATCACC
Band lengths:
170-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]