MmuINT1020755 @ mm10
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75662661-75662925:+
Coord C1 exon
chr2:75662661-75662756
Coord A exon
chr2:75662757-75662844
Coord C2 exon
chr2:75662845-75662925
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAAATCTTGCATTTCCTTAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GTAAGGTGTTCTCATTATATGTGCTGATCTATCAAATTTACTAGTAAGTTGAAAGTGAAATTTTAATTCAAATCTTGCATTTCCTTAG
Seq C2 exon
GTGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005:ENSMUST00000111962:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGATCTGGCAACTT
R:
CACCTCCAAATCCATTATATCCACCA
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types