HsaINT1015771 @ hg38
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216676-177216940:+
Coord C1 exon
chr2:177216676-177216771
Coord A exon
chr2:177216772-177216859
Coord C2 exon
chr2:177216860-177216940
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CATTTCTTGTTTTTCCTCAGGAG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
Seq A exon
GTAGGCTGTTTATCTTCTAAGTACATGGATACCTGACATTTTGGTAAGTTGAATATATTATTTTAATTCATTTCTTGTTTTTCCTCAG
Seq C2 exon
GAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAATGGATTTGGAGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144:ENST00000392524:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=NA C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGGATCTGGCAATT
R:
CACCTCCAAATCCATTATATCCACCA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains