HsaALTD0003082-7/8 @ hg38
Alternative 5'ss
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216685-177219314:+
Coord C1 exon
chr2:177216685-177216693
Coord A exon
chr2:177216694-177216762
Coord C2 exon
chr2:177219247-177219314
Length
69 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGAA
5' ss Score
-7.62
3' ss Seq
AATACTATGTATATTTTCAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GTGGATCTG
Seq A exon
GCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTG
Seq C2 exon
GTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACAGCAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-16-33,17-33,18-33,19-33,20-33,21-33,22-33,23-33-7/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PD(2.6=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains