HsaALTD0003082-6/8 @ hg38
Alternative 5'ss
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216685-177219314:+
Coord C1 exon
chr2:177216685-177216693
Coord A exon
chr2:177216694-177216750
Coord C2 exon
chr2:177219247-177219314
Length
57 bp
Sequences
Splice sites
5' ss Seq
GTGGTGGAA
5' ss Score
-7.76
3' ss Seq
AATACTATGTATATTTTCAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GTGGATCTG
Seq A exon
GCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTG
Seq C2 exon
GTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACAGCAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-16-33,17-33,18-33,19-33,20-33,21-33,22-33,23-33-6/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PD(2.6=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains