HsaEX1017017 @ hg38
Exon Skipping
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216908-177219159:+
Coord C1 exon
chr2:177216908-177216940
Coord A exon
chr2:177217783-177217785
Coord C2 exon
chr2:177219037-177219159
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACCAGGATATGGAAACCAAGGTG
3' ss Score
-5.04
5' ss Seq
GTGGTGGAT
5' ss Score
-3.8
Exon sequences
Seq C1 exon
GTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq A exon
GTG
Seq C2 exon
GTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.000 C2=0.757
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF116273=HnRNPA1=PU(94.7=85.7)
Main Inclusion Isoform:
ENST00000432457fB17178
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGATATAATGGATTTGGAGGTG
R:
TGGGTCCATAATTTGATTGCTGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains