MmuINT0078456 @ mm9
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75500718-75500982:+
Coord C1 exon
chr2:75500718-75500813
Coord A exon
chr2:75500814-75500901
Coord C2 exon
chr2:75500902-75500982
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAAATCTTGCATTTCCTTAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GTAAGGTGTTCTCATTATATGTGCTGATCTATCAAATTTACTAGTAAGTTGAAAGTGAAATTTTAATTCAAATCTTGCATTTCCTTAG
Seq C2 exon
GTGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-Hnrnpa3:NM_053263:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=NA C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGATCTGGCAACTT
R:
CACCTCCAAATCCATTATATCCACCA
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: