HsaINT0076974 @ hg19
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Coordinates
chr2:178081404-178081668:+
Coord C1 exon
chr2:178081404-178081499
Coord A exon
chr2:178081500-178081587
Coord C2 exon
chr2:178081588-178081668
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CATTTCTTGTTTTTCCTCAGGAG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
Seq A exon
GTAGGCTGTTTATCTTCTAAGTACATGGATACCTGACATTTTGGTAAGTTGAATATATTATTTTAATTCATTTCTTGTTTTTCCTCAG
Seq C2 exon
GAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAATGGATTTGGAGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-HNRNPA3:NM_194247:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGGATCTGGCAATT
R:
CACCTCCAAATCCATTATATCCACCA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)