BtaINT0072911 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021580 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:19702517-19702781:-
Coord C1 exon
chr2:19702686-19702781
Coord A exon
chr2:19702598-19702685
Coord C2 exon
chr2:19702517-19702597
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
ATCCACACCTTTTTTTTAAGGAG
3' ss Score
5.27
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
Seq A exon
GTAGGACATTATCTTACTTCTGAGAACATGTCTACCTGAAATTTATTAGTAAATTGAATATACATTTAATCCACACCTTTTTTTTAAG
Seq C2 exon
GAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGGAGCTATGGAGGAGGCGATGGTGGATATAATGGATTTGGAGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021580:ENSBTAT00000028757:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGATCTGGCAACTT
R:
CCCCTCCAAATCCATTATATCCACC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]