GgaINT0098569 @ galGal3
Intron Retention
Gene
ENSGALG00000011036 | Q5ZME1_CHICK
Description
NA
Coordinates
chr2:32117299-32118015:-
Coord C1 exon
chr2:32117933-32118015
Coord A exon
chr2:32117781-32117932
Coord C2 exon
chr2:32117299-32117780
Length
152 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTTTACTTCTGTTGAAACAGGCT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
Seq A exon
GTAAGTATGTTTTTTAAGTGCTAAAATTGCAGTGATTCGTGAGAGTAGCTGCAGGAGTTAAAAGTTTTTTAGGATATTATCTTTCCTATAAAAAATGGTTAGCTGAATAATTTCATAACCTATTTTTTTACTCTTTACTTCTGTTGAAACAG
Seq C2 exon
GCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATGGAAATAACAATGTTAAGGAAACACTTATCTCAGTCATGCATAAATATGCAGTGGTATGGCAGAAGACACCAGAGCAGATGCAGAGAGCCATTTTGTGAATGGATTTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTTTAGTGGTCTTTGTAAGTGTAGAAGCATTCCTTTGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTCCTTTTAAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATGGAGGGAGAAGCCG
R:
ATCCTTCCTCCACAGTAAGGT
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]