BtaINT0072895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70204605-70206198:+
Coord C1 exon
chr4:70204605-70204687
Coord A exon
chr4:70204688-70206062
Coord C2 exon
chr4:70206063-70206198
Length
1375 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTCCCTGCTGGAATTTTAGCAT
3' ss Score
5.58
Exon sequences
Seq C1 exon
GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGAGGGAGAAGCAGATACTGAGCTTCTTCCTATTTGCCATGG
Seq A exon
GTAAGTAGCTTTTAAGTTTTACATTGTTAATGTCTTGGGAGACCTAGCTGCCAGGAGTTAAAAGCTTTTTAGGATCATGTTATCTTTCCTTAAAATCTGGTTAGATGGATAATTTCATAACCTATTTTTTTTTTACTCTTTACTTCTGTTGAAACAGGCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAGGAAAATCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAGATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTCTAGTGGTCTTTGTAAGAGTGTAGAAGCATTCCTTCTTTGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAATTGTGTAATTATAGACTTTTTATTTTAAATAAGTTAAGGAGTGGGTAGTATAATTAAGGTCTATTGCAAAGCTGTTGTTATATTTGTGTAAGATAAATGCTGGTCAGATATAAGTGTGTTGTCTGCAATTCATGAGGATTAAATTATCTAGATAACTTAAGGGATATCTCTGCAAGGAGAAACACCTTTTTAGATCTTTTAGATGCTGCTGCTTCAATGCAAGGAAAGGAAAATAACCCCAGCGAGGTACTCTTCAGGGATACAGGTCTAGTACAAGAGAACTCTTTGACGGCTACTAAGGTCAGCCAGTCTTAAAAAACTGTGCTGTTTCTACAAAGCTTTAACTACAGTAGTTTTTAAGGATGCCAACGAAAGCTGAGGGTGTAGAGCAAAATAGTTCTAAGCTTCAGTTAAACTTCTTTAGGTAAGATCTCATTTACTTTTCCTTTCTTAATTTTCCTCCCCCAAAGATAAACTAATACTCTTCAATGGTCTTTCAGTATAGTTGGTTCTTATGTAGTATAACATAGCTATAAATTGAGTTTAACAATTTTATAAACTCAAGAGAATAATTTTATAAACCCTGTTTTCCAATCTGTCATTTTACTTATATTATTTTGGTTGTTTTTTTTTTTCCCCCTTTTTTTCCTTCTTTCCCACCCCCTCCCCCTCTATGAAGATTCAGGTGCTTAACATATCATTTTTTTCCCTGCTGGAATTTTAG
Seq C2 exon
CATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGGTCCAGGAGGCAGT
R:
TTTACTACCAACACCACTGAAGGA
Band lengths:
214-1589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]