BtaEX0017284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70204605-70206198:+
Coord C1 exon
chr4:70204605-70204687
Coord A exon
chr4:70205532-70205762
Coord C2 exon
chr4:70206063-70206198
Length
231 bp
Sequences
Splice sites
3' ss Seq
AAGGAGAAACACCTTTTTAGATC
3' ss Score
0.15
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGAGGGAGAAGCAGATACTGAGCTTCTTCCTATTTGCCATGG
Seq A exon
ATCTTTTAGATGCTGCTGCTTCAATGCAAGGAAAGGAAAATAACCCCAGCGAGGTACTCTTCAGGGATACAGGTCTAGTACAAGAGAACTCTTTGACGGCTACTAAGGTCAGCCAGTCTTAAAAAACTGTGCTGTTTCTACAAAGCTTTAACTACAGTAGTTTTTAAGGATGCCAACGAAAGCTGAGGGTGTAGAGCAAAATAGTTCTAAGCTTCAGTTAAACTTCTTTAG
Seq C2 exon
CATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726_MULTIEX2-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTATGGTCCAGGAGGCAGT
R:
ACTACCAACACCACTGAAGGA
Band lengths:
212-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development