GgaINT0100160 @ galGal3
Intron Retention
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18200569-18206886:+
Coord C1 exon
chr2:18200569-18200640
Coord A exon
chr2:18200641-18206781
Coord C2 exon
chr2:18206782-18206886
Length
6141 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCTCTTTTTCCTTTTTATAGGTA
3' ss Score
12.22
Exon sequences
Seq C1 exon
GTCTTCCTCAAGCCTGTTATTGAGGACAGAAACATGGAGCTGGCCCGAAAATGCAGTGAAATAATAAGTGAT
Seq A exon
GTAAGTGACAGTGATAGTTTGCATCCTTACATTTGCATTTCTCTTTTCAGTGGTTTTATTTTTACCACATATATATATTTATAGTCTGTAGTTATTCAGAAATATGCCATGCAGCATGTGCCCATCCAAAGCTCAAATATAAAGTACAAATAATAGAAAAGCACAGCGTACTCTGATACCTTGAATAATTAGCTGTGGAAGGAGGAGTTTTTTGGAGCACTTAAGCTGTATGAAGCATAGGCCTAGGAAGAAGTTTGAAAAGTTGGGTCTCATGTGGAGGATCACTCCCTTGAGAACACTGTGGCTCATTTCACCAGTAAAATTCAGTATTTTTGCCAATTTCTGCTCAATCATATGAAGTTTGGTTGGTTAGTCTACAACTGGATGCTGTACTTAGCTGTATAGAGAGAAGATAAAAGTCAAACAGATGAACTTTGGTTATTGTCTATTAGTCTTTGGTGATAGAAGCTCATATCTGCATAACATTATTATTGACTTGCAGTTACGGGAAAAACCCACTGAAGTGATAAGGTAAAGTGAGTCTGAAAAGTAGCTTTTCCCCTTCATGTGAATTGCAATTGGAATGATTGCTCTATACAGTGGGTTGAGGATGGTGACAACTGAGAAAATGTCAGTAGAGAGAGACTTTCACAACTGTTATCCTAATAAAACTGAAACTGGGGACTGGTTCATGTTCTGTTATAATAATACCACAGCACATGTTGTGTTAGTACAAGGTTCAGGATGTTATTATTCAAGGTGAATAATTTTTGGAGAATAGGACATACAGAATCTACATTTTAAATGATTAGAAGTTATGTATCAGAAAAGAATAGGAAACCCAAACAAACAAACAAACAAACAAACAAAAAAAACAAAAAAAACCCAGTACCTCAGAAATGTAGGTTTTACAGTGCTGGCTCAAAAGTGACATGACAAATAAAAAGCTTTCTCTTCGTCCATGGACCATCTGGTAGTATTTTAATTTTTACAAGATTGCTGAAAATTAGAAAGATCCTTAAAGGAAGCTACCATGATGGCTCCTTTGTAATCTCAAGCTATTTTAGGAAGTGGTAGAGATGATTACTATTTTTACTGATGGCTGTCTACAAGCTTTCTGTGGGAAATGAATAGCATCTGACACAATATAATACATTAACTCATGGGAAGGCCAAATAAAAATGGAGATGGAATACCAGTCTGACCCAAAATATGTGTTGCTTCTGTGCATTTTTTTTTTCTAAATGTTTGCTGTTCTTTAAGGCAAAAACTCATTGACAAATGTTGAAGAAATATTTGCTTTCGTTGAAAGGAATTACTACTGTGCTGTGTACCCATTAGTGGTAATGTTGGCGGTGACTGTTAGTCACTACATTTAGCAGTTAATTGTATTTTTGCTAATTTTCTGCAGGGTCTTGGGAGCTAAAGTGAGTAATTAAGTTAAACCAGGTTCCTGAAACCTTTAACAGTGTAGAGATGTGGTCTTTTGCTGAAAGCTTGTCTTGCATTTAGCCTGCAAATGCTTTTGATTTTTATTGAGATATGTGAAACGTAATGGCAACGTGTCATTAATGCTTTCAAGGCTGTAGTAATAAGCAATGGTCCAGAACAAATTTAATTTCAAAGATGATGTTCTTCGTTTAAAAATGACACTCATTTGCTTTATTCAGCCTTTGCTGAAGTCAGTAGGTGTGTTCTCATTGGCTTGGATGGAATGTGTGTACGCTTAGGGAATGAACTGAAATTTCTTGTGACCAGTGATGTTGTTCTGTAGTAGGTTCTTCACCTTGCACACATCACTGAGGAGCCCAATCAATTGCAAGGAATTTGCATTTTGACACAATAATCTTCAAAACTTTTTATATATTCTTCATGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGTGAATCTTTGGTCAAACTGCCGTTTGTGTGAATGTATTGTTGGTGAATATCTGTTCATTTTAGCTGCACAGTGTTTTTTTGGGGGGGGGGGGTTGCAGTTTTGCCCCAAGATGGCTTTGTGACAGCAGCCCTTGTCCTTGTGGACCATGGGACAGGGTGGTTGTCCTTGTCAGTCTGGTAGCCTGCCAGCACAGTTCCTCCATGAGAACACAGTTACAGGAGTGAGCACTTGTGACTTGAGATACTGTGATTGTATTGCACTCACCCTGCATTCTTTTCAGACTGACTTCAATTTGTCACTATGATTTAAAGAAAAATGGTAGTGATGGCATTCCTGAGTGCATGTGCAACTGTCAGGCTTGAACTGTATGTGGGGGGAAGCTGGGAAGTGTTTATGTGCTCCTGTTCTTCAGGAAATCCCCATCTTCATTTGAGGTTGGCAGATATTTGTTCTGTGGCTCTGATACCCCCTGAATTGTTTCTCCCTAAAGCCATTTCATTTAATCTCCCTCCATTACGCAATTTTATTTCATCGATGCTTTCAAAACTGTCATGTATATTAGATTTAAATGAATTACCTTCCATTCTAGGCCCTCTCTCTTCCGTATTGGAACTGAGCCTATCCATTTGCTTGCATTATTTACATTTTAGTATCCCATCATCAATTTGGTCTGAATATGTAGTGCAATACTGTGAATGCTTTTTGGTAGAGGCAGACACTGTGTCTTCTGAAGATACTGCTGTATTTTAGTCCTGTGTGGTACCAAGTGCTTTTTGCCACCTAGAACAAAAATAGTATCACCATCTATCTATCCTTGTATGGGGGCCAGTTTTGCCTCAGGATACATAAAAGAAGAGCTAATGAGACATAGAGCCAAGTGTAGAAGTAGTGGCTTTCCTCAGGTATCAGTAGGCTTGGGACAACCTAATTCAGGCTGGAGGTGTTCTTCTGGGCTCACCATTAGTAGTCAGAGCCTCTAGCTCAAGAGTACTTTGAGGTCAAATTTCTTTTGAGTGGTAGAATACTATGGAACAATCATATTGTATGCTTGTCCTCACACTTTTCTCTAGTTCTCTGCGGCCACAGAAAATGGATTTAGATAGATCTGTGATATGACACAGTTCTTACACTGTTAGAAGGATCATAAACTAAGAAATGAAGGATTGGACAGGGAAATTATAGTGGAAAAAAAGTTCTCTTTCAATCCAGCCTAAGAGCTAGATGAGAAAGTTCAGGCCTTTTTGTGACTCTTCTAAGCCTAAAGGGATCTTTGAGCGATGACAGTTCTACAGTGGATCTTGGCATATTGGTCAACATAGCCATGCACATCATCACTGGTGTCAAAATACTAAGAACCGTTTTTCATATTTAAATGAGACAAATATGTACCCCTGAATACGAAAGAAAGGTAACTGCTTGGGTTAGTCTTGGATTAGGCTGACACCATTTGATTTTTTCTTCTTGGAGCAAGCCATGGACAACATGAATTTTCCTGGTAAGCCAGGAAGCTTCAGCCTAGAGATTGGATGACCTTTTGTAAAGTTTGCTTTTAGCCAAATAACATCCGTTGAGCAAAACAAAAAAACAAGCCAGTTTGAAGCTTATCCTTTTAGTGATTGTCTAGGAATTTTAATCCAGTGTTACTGGATAGCCGTGCTGCTGATCAGGTCATTTTAAGATGTGCCTGGGAGGAGACAGGGTTCAGTAGAGAGCTATTAAAAACTGTGACTTTAGTGAGATATTGGCCTTCAGAAGTATATCAAAAGGGGAGTGGTGGCTGTAGGCCATCATTTGCAAGTTTTTCCTATCATTTGTTCTTTTTTCTAAGGTTTACCAGACCTATTCAGCCTAAACAGAGTGTATTGTGGTGAAGGGTAAGTCAAAGGCAAAATTTCCTATTCAATATTTTAGGTGCTTGATTTTGGAACCCCAAACTTTTTCAAAGAATATTGATTTCTCTGCATGTCTCTTCCAGCAATTGATTATGTTCTGTCATAGCCAATTGCTTCAGTCTCCCAATTACTTCATTTGAAATAAATAGACTTTTTAAGTACACATCATGACTATGTTATACTTGTCTCATTTTGTCTTCCATTTGCCTGATTCTAAGTGATGTAAACACTTCTGTCGCAGAATGAAGTGTGCTGAATTAAAACTGGACACACAGATTTTGTTATATGTCCTCTCTAAATGACTCATTTGAACCTGTGTGGATAACTAGAATAAATATGAGTAATAACAGAGTGACATTACTCCTTTATTTCTTTTGATTATTTTGTAAGCATGATTTCTACAGCAGAATGGCTTTGATTGTTTCTTCTAGTCCCCTTCCCCCCAATTAAAAGATACCTTAGGAGGCTTTCATGCTTGATTTTTGAATGTAATTATTACTCTAATTAAAATGGATGCAATTACAGTTAGCTCTCAGTTATCTGTGTGTGATTTATCTAAGTTGTGAGCAGCACGGCTCTCCATCTTCTCTGCCAGAGCCCCAGTTTTACAGGCATCCTACTGGAAATTCCATCAAACCTAACCAATAGACAGCTCTATCGACAATCCTATAGTCTTCCTCAACCATATTGCTGTGAATAGCCATAATTCTTCAAGGCTGCTTTTTAAGCCATTCATGTGAACGTTCACACCTCATATCATGCACAGCCTTAAAAGCATGTGCATGCATACACACAGGATGGCTGTATAGGCACCTGCTCATCCATCCTTATCATGACACTGCAGTTTTTGTACATTACTCTGTGGTTACCTACAAGCACAGTGGCACATACAGGGGTTACATGAACTACTGGATCAATGTGGCCCTGAGTAAAATGACGACATACAGTAATTTTACACCCTTTATTCACTGAACAGTTTTTACTTAGAATACACTGTAGAATTATTTCCTACTTAGTGATTATGCAGTCAACAGTCTGAAGGGAATTTGGCTTTGTATAATTCATTTTATGGAGTACAAAAGGCTTAATCAAAAAGTTCCAGAGCTGATTCTGTGTAAACTACCATTATTCCTCATGAATTTTCCAAGTCACTTTATAGGAAAGTAAACTAGAACTTGTGATACCCATTAAGGATGCAGAGAAGGAGGAAATTAATACCACATATTTCTGTAATGGTCTTGTTGCTTCTGTCTGCTGCTTGTCAGCAAGCTGGGAGTGCATAAATGCATGGTGCTGTCATGCAGAATGTGAAAATGAGGTTAGAGAAATGGTAGCAGATAATAACCAGGAAAGCTTAATCCTAAATAATTCAACTTGCATTGAATGAAACTATACTATATGAAAATAAAGACATCTCACTAAAATAATTTAAGGCTACTTATTGGGAGTCCCTTTAAAAGTAAGGACTACACGTAAAAGTTGTCTGTCTTTAGAATGTGTTTAATCAATCTTGTTGTATTCACCATATTTCTTCATAGTTTGTATGTAAGTACAGATCCTCTACGCATTCACTATGTCTGTAGACGTTGCGTTCTTCACAGTCTCACCAGTAGATGAGTGACTTCATCAACAGGCACATGGTTGTTTTGGATAACTGCATATTGCAGCTGTATCTACTGTCCTATTGTCTGGTAGCAAAAAAGTTGGGACTTCGTGGTGTTTTTTAAGAAATAAGCTCTTGCTTTTTTGCAAAGTGCATGGTGGTGTTTTGCGCCCAAAGTGCTTTTAGTTGTGTATGTACATGACTTAAGAGTTGGCTGATACAAAATTTTCTTGGCTTTTTTAGAGACTCTGATATTACCTCCATGTCACAACCATAGGGGTGCTCTGTAGGCAATGCTTTGGCAATGGACTTGTGAATTTTTTCACTTAACTCTTGGATTCATAAAGAGACGTTTGATTATGCTATACAGATCCTGGGCTTGCAAGGTCTGTGTTGGAAGCCAGTCTAACAATTTTATCTGTGAGATCAAAGAGGAAGGTCTTGATTTGTCTCTCTTTTCTTTAGATGAGCAGAGCATCTATGGGAAGTGGAAAAATTGTGCTGTACATATAGAGAAAAATCATGTATTTATCATTTTTGATATTAAAGAGCTCTGTGACTTTTACATGCCTGATTCTGTGTATGAGAACTAGGTATTTCCCTCCGTGGCCTAAGAAGTTTGCAAGCCATTGAGCACGTTATTATTATAAATAAAAAAAATACTAGCCATTGTATATTTTTCAGTTTTTATGAACAACTGATCTTCTCTTTTTCCTTTTTATAG
Seq C2 exon
GTACACTACAAAGAAGAATTTGAAAAATCTAAGGGCAAGTGCATATTTGTACCTGACACCCCTCAGCTAAAACACGTGAAAAGTGTTGGTGCTTTTATTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943:ENSGALT00000012903:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=66.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]