GgaINT0100251 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9886501-9896252:-
Coord C1 exon
chr2:9896082-9896252
Coord A exon
chr2:9886563-9896081
Coord C2 exon
chr2:9886501-9886562
Length
9519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATGTTGTTGTTGTTTACAGGGA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCAAGAGGACTGGACCTTTCACGTGTACGAACATGTGTAGTAGTGGCTGAAGAACGACCTCGGATAGCTCTTACTCAGTCATTTTCAAAATTATTTAAAGACCTTGGCCTCCATCCGCGGGCAGTCAGCACATCACTCGGCTGTAGAGTTAACCTGGCCATATGTTTGCAG
Seq A exon
GTAAGATTTTTCACTCCTTAAGCTCGAATGAATAGTTGTTTATAGGATGTGGTTCTCACTAAGAAACGTTCATTGGATTCCTTTTGGCTGCTTCTTTATAGACACATTAAGAATATGCATTTAGTACTTAATGTTCTTCTTCCATATGTAGGTAGTAACTTCTGTTACTTTGATAGGGATTTGTATTCATCCCTCTCACGTTGCATTCATAGCATTTATCCTGCCCATTAATAACGTAATTCAGAGAAATGCATGGCAGTGGCAGAATATGTACCCTTTACTCCAGAAGTAGTATTTGGTCACATAATGTAAAATCCTGTTTACAAGTGCTTACTTTTAATATACTACAAAATTGATTTTTTTCTGTTTAGAAAATAACTCCAATTCTTACTGTTAACTATATACATATTTTCTGCATGCAGTTTATTGCTTACAATGAAAAATTACTTTGCAGCATCTATCATTCTGCTTTGTTCACTAATCAGAAGAACGTAAACAGGGATAATACAGGATTTAACTTGCAATCTCCAGGAATCTTTGTCGAATGATTTTAAGGACAGATGGAGCACTGCAACGATCTGATCTGAATTTTTTAATAGCCTCTAGCTTTTCAGCCACTGATAGCTACATTAAGCTAATAGCTTTATTCGGAACTATAGCATATCATTGTGTCTTTCAGGACTCCAAGTGATGACAGTAAACTTGGCTTTTTATAAGGCATTCTATTTTGAATTATTTTTGCCTTATTTCTAATGTGAGTTTATATGCCCTTGTGTTCCACCAATTTTTATTTTATTACATTTTTTCTAATCTAGAATAAAGAATTTCATTTCTATCTTGACTTTACTACACAATTTAGTCTTTGATAAATAGATGAGGAACCATAAGACTTCCTTCCTGATCTCTCTCATTTTTATGAATCCTGATCTCTTCCTGTCCTTCCAAATCTGGTATCAGAATTTTACATACTTCTCCCATAATAATGCCACAGGTGTCTCACTGATATAACATAATTACCAATGTATAATCTTTTAAGATCATACAGGAGAAATCTACTGCACTGGCTGGGATGTTCCGTATCCATTTAGTCACCTGCCATGTCTCTCACCTCATAAAGTCACTGTCTCCCCAGTATAACTGGCCTCCACTCTGTGTGGTGTGTCCCATGTTTTACATCTGGCGGTTATCCTTGGTTTACACTTAGGAATTTCTTAAGCATGTGACGTACATAATTACTTTGATGTGGAAGGTAGGACCAGATCTTCCCAGTGACACTACGAATAAGGCAATTGCTGTTCTTACCCTGATTGTCATCCATTATTTTATCCAGGAAAATGTGACAAATACAGGGGATGGGTTCAGCACACACCAATATTTCTGTGTGTTATGTGAGCCTAAACTGTTGCCCTGCTCAACATAGCTGAAGAATTATGGCTTTTGTCTGAGTTACTTTCTTGTTAAGCCTATCAAAAAAGGAATGCAGGAGATACGCCACCTTTCCAACACTGCTTTCTCTCTGACTGTCAGCACAATATCCCTTTGGCCCGGGGCAACTTTAACTATTGTCATCACACAGATGACAAGGCAAAATTGAGCAGAGTTAAAAGTCCTTCTGCATCTCAGAGGCAGAGTTCTGTACTTTGAAATTCTGTAATTGCTGCCATAAGTATTCTCCAAGAATAAACAGTCATGAATATCTCCTGTTGTTTCTAAAGTAACCACTGGATCCTTCAGAACAGAGGATCTCTTCTCAAAAAAAAAAAAAAAAAAAACCCACAAAAAAAAACCAACCCTTAGAAATAATAGTCTTGAGAGAAAAATATATCCTTTAGGTCAGAAACTTGAATGAACTCAAGCAGCAGTTTTCTACATATTTCAATAATGGGTTTAAAACAAAGAGACACTGACTGAAGTTTTGAATTCTCTTCTACTTATTGTTTCTTTGCAAGGATACAGGCCTCTTTTATTTCTTTCCCTGTACTTAGACTGCTGTGCAGTGACAAGGCTGAGTGGACATCTCAAAAAACACCTAGGAAATCTTCTAAGTCTTCTGACGTGTGACAGCACAATTCAGAAGGAACCAGTGTAGGCCAGTCAGCAGGTGCAGGTTGGTGTGCTTTCCCAGTCAGCAATCCAAGCAAATTGAAACAGCTCACTTGGAGGAACATAGTGGGTAGCAAAGACACCCATGGTTGACTCTCTTGCTTTCCTTTAAATGCAAAAGGAAAACAGAGAAGAAAAGTGAGCTTTTGATAGAAATAGCTTTCTAATTCATTCCTGTCTCTTTCACCATTTTGAAGTGCCAGCTGGGTGTCTTTACAGAAGACACTAAAGGAGGAAATGATGGCCTACATCCATGGCCAACTGCTCTGACTTCTCTGACAGACCAGGATGGAGTACACCAGCTCCCCTGGGCAGCAGTGATGGATCTGCTTTGAAAAATACAATGAATTCTGGCTGACTTCTGGTCCATGTGGATCATAGAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGAATCATTAAGTTTGAAAAAGAACACTAAAATCATCTAGTTCAACCATATGTGAAGATAACAAAGACAGGTTATCATCAGAAGTTTGTGTGCCACTAATGAAATTCTCCTTTTTGGACTTGCAGGAGTCTCTAATCTGTTCATAAATGGTGGCACCTTCACCAAGGAGATAAGTCATTTGCTCAGGACAAATAAAAAAATCAGGAGGATGATGCTAAGCCAGGTTCAGTGCCCAGGCTTTCAAGTAAGCCTTGCTGGAAATAATGTTGTACTAGGTTTGCCTGGATGGAATTAACTTTTTCATACCAACTCCTATGGTTCTGTGCTTTAGATTTCTGACTGAAGCAGTGCTGATAACACACCAGTTGTCTCAGTATTGCTGGACAGTGGCACACAGCAGCACTTTGTTTCTCACTCTGCCTGCCTCCCCTACACACTGAGTAGGCTGGGGGAGTGCAAGAAGCTGGGAGAGGACACAATTAGGGCACTCCAAAGGGATGCTCCTTACCATATAAAGTCATGTTCAGCAGTAAAGAGGATGGGGGGAGTGTACTGCAACAAACTGTAAAATTGGATAACTCTCTGAAGGAATATTATTGGCAATACTGTGAATTTCAGACCAGCACACAATGTGAGCTTAGTGTAAGGTGATTAATAGCCTGACTGATCATATAGCTTAGTGTCAGGCTTCATTTAGATGTACTGAGATTTTACATTTCAGTCCTTTGGACAAACTAAAGCCATATACTATCTAAAAAACGGTGTGGTTGGGGAAAAAAAAAAAAAAGTTACTTCAGAAAGTCTATATTTGGTAACATTACCCTCCCAAGTGGAATGATTTTTGAAGCATTTGAGCCAAGGGTAGTTTGGCAAGTTCTAAAGGGATTTGAAATATACCTAAAGAGGTTACTTATAAGCATTACTGTAAAACATGTCATCTTGATAGAGAATATAAAGATACAGAATGGCATCCTTTGAAGCATCTGGTAGTAGGCATTGCCAAAGACAATGCTGAATTAGCCTGAAAGCTCTTTCCAAATGGTCTGGAAGATTATGGCTAGTGATTTTCCAGTATACCTCGTGGGCTCTTCTGTTTTTGGGCTGAGGAACAGAATGAATTTTTATCTGCGGTCAACAATGTTCCTTAAATTAACATTGTCTCTGATATGTTCCAGAAATGGATCAGGATTTCTGTATTCTTCACATTCACATTGCATAAGAATACTTATAAAAGATATTTGAATCAATAGCATCTACTTTTGCAATTTTTCTTCCAAGTTATACAGTCCATGAGATCAGCCAGTGTTTCCATACTTCACAGCAGTAATGTTATCCACCCTATTCTGTGGTCATTAGTAAACTTCAATCTACTCTTCTACACATATCTCCCTGTTCAACTGTGGTGCTTTACTGGCAAAAAATCTATCTAGGGTTTCTTCTCCATGGACTGCCTCTAAGGCAACTTGGATTTGATCTTTGTCTTTGATACCTCCTTCACTTAAATTCTATTTTTTTTTCTTTTTTTTTTCAGGAGAAGTGAGATAAATTAAGACTCAGGTTTGTCCAGGGGAAAGTATACTGATTTTTCTGAAATGCTTTTACTGTTTTCCACCCCTTTGTGAAGAAGAGACGTGTGTGTGTCTAAAACTTCATAGCAGAATTTGACCTTTTATTAAAGAGTACTTTGAGAAGGAAATCATTATCATAATCTCTTTAGTACAAAAGAGCCTTAGCCTACCAAATGAATCATAATTCCAGGATTAGGATCACTGGCAGACTAGTGCAGTATCATTTGTATTCATTTCCGCTCAAATTTAGAGCAAATTTGCAATGTTTCTTTTGATGTAATCGCTTTGGACTAGATTTTTAGAGGTATGCTTTTGAAAATAAATAATTTTCTCCATCTTCAGGAATTAAATACCTCTAATATCTGACTTTTCATGGCTGTATGGTCGCCAATAATTGTCCAGGTATTTTTGAGATGAAAAGATTGCATCCAGCATGTTTTAATTCTCATTAACTGGCATCCTAGCATTCCTAAGAGAGAGAAAGATAGATATGAAAAGTAACTGCTTTCTTACAACAGCACAGATGGTTCTCTAGGATTTTAGCTAATTTCCATTTAAACACTTGAAATAAATAGAATTTTTTTTCAACCTTCTACTTAATTTCAGTTAAGGAAAAAAATTGTTCAATTTTCCTCAGTTATCTCTAAAATGTACTAACTGATCTGCACAGACTAGGGCAGGGGAGCAAGATTCATTTTGCTTCATTTAAGTCACCTTTAAGATAGGCACCAATTAAGTTATCTCATCTACCCGTCTATAGTCAGTAGAGACAAATAGTTCCAAAGGGAGTTTCCTTCAGTATCTTACATGCCCATCTTGGGAGGAGATTCATCACCATCAGAGGACACTTTCTGCCTTACAAGTCACACTTTCTTCTGTGATGGCTGAAATGCCATGAAATGAATCCCCCACCATCTAGCAAAGGGAATTTTGTTAGTAAATGTAGGGGTTAGAGGCAATGTTACTTTTTATTTTGCGACAGATTGCACTTTCTGGAGAATCATCCATATTAAAAGTAGTAAGGGATTGCTCTGAGGAGAGTGATACAGGAGAGCACACACTTTATCAGATGTATGATTCACACCTAGCAATGTGGCGCAGCCCTGGGTGAGTTCCCTCCAATTCTGTTTTCCCACCTTTCTTATGAGTCATGCTATGATTTTCTATTCACAGCTACAGCTGCTGTGCTTGTCTACTTGAAATTGTTACGTATACATCAAAAAATCTATTTCTGAGCATCATTGGAGCAGGGGTAGACTCAGAAGTATAAACACTGAGGCCACAACCCCAGGTAGCAAAACAAAACAAAACAGTTATTTTTAAACTCTTGGGACTTCTGTTTGCCTGGTTGATGGTTTTTAGCTCTGGGGAGGGAAGCAGGGGAAAGCACACAGATGGGCCTTTAACTCGGTGGAAATGGGATATAGGCTGAGTCCTGGCACATGGTCATCCCTCCTGCTAACTTGTCCTGGCAGTCCTTGGTGCAGTTCCAATCTGCAGTGTTTTCCCAGAGAATAAATGCTTGGCATGCATGCCTGGCTCTTAGATGGGACAGGGATGGTTCCCTGGTGGCACCCTGTGTGTGAGCAAGGCATTTGTTTATTCCAAAGGATATGACTGGCGATGTAGGAGTTTTCAGACAGAAAATGGTCTCTAGCCCATTTTATTTCCCTGAACACTACGCAGCGTGTCCTAAGTATCAGATACCACAGGGGTGATGTTGTGGTTTTCCCATTAGCAGCATGACAGATGCTCTCACTAAATAATTGTGCACTGACAAATGGAGTCAGTCACTCATGCCTTGGATTCTGCTTCCTTAAAATGATGCTGAGACTTCAGGTTGACTGCTGTTTCTTAAGGCCCTAGTTAAAAGCCATATCAGTCTCTAACACAAAGTCCTCTCTGGACCTATAGCGTAGTCATAAGGAATAAATTATATAACTGATGAATTTCAGCAGTTCTCCTGCTTTGATGCAGTTACATTGCAGTCTTCAACCTTGATTATTAGTAATATTTCTATTTCAGGGTAGCGATGTAATAAGCAGATCCATTCTATTTTTTAAAATGCTTCATCTTCCCCCACATTCAAAATGCACTTATTTTTACATGCTGCTGTTTTAGCCTCATGTAAACTGTAACTTTGTGGGAATTAGGAAGTCTGATGAAAGGGACATGGAATGGCAGTGCTCTGAGAGCTGTTTGTTTTCTCAGGCTGTAGGGCAAGTCCCACAGCAGCCATCTGCATTTAGGTATTCCATGTCACAGGAGCAGCGTAGGAGCGGTCATCACTGTGTCGTCTCCTCGTTGCATTATTGATTGTGGTGACGAACAGACGGGTTTCTATTGGTTTCTAATTTTACTGTTTTATGTAAGTATTACACTGAGTATAGTGGCAAATAAACTAAGAATGAAGACTTACTGAACTATGAAGGTACTCCATTCAGTTATTGTCTTGGAGTAATTAGATTGTGCAAGAAGCCTTGATTTTATTTCACTCTAGGATCAGGTTAATCTGTGTGAAACAAGGTGTAAGTATAATGCTCTTTCTCTGTTGTATACTAATTTTTTTTTCCTCCCAAAAGAGAGCTTTCTTATGGTTTCCACAGGACATCGCTTACAAACTTCTAGTAGTGAAATGGCAGACCTGGAATCCCTGTCTCAATGGATGTACATTATGATAGCAAGGCCACAATGTTTACTGACTTCATCACAAAAAAAAAACAAACAAAAAGAAAGAATGAAAGAAAAAGAAATCAATCAGTATGCTAGACACATGTTTTCCACTAACAACATTGTCTGTAGTGTCCTAAAACCATTGAAGTCTGTTTGTCCAAGGTTAGCAGTCTACAGCTGTCTCTTCTGTTGCTCTACTAAAATGTTGACACCTCATTTTTTACTTTTTTTAACCTTTAATGGTATAATGATTAATTTGTGAGATTCCTGTATTTGACATTGTTTTTCTTTTTATTTTACTCCCTGCTTTTTGCATTCTCTTCTTTTTTTTTTTCTCCCACCCTTCATTCCCATGTTTTACTATTATTTTTGTCTTGTGTTACCTTCTTTCCTTCTCTCCTTCATCCCTGCTATTCCTGCTGCTATAGCCTCACAGGCTGGGGAAGCTGGCCGAGCAGGTAGGGGATTTTCATGTTCCCTCAATACCCACCTATCAGCTTCCAACAGTGGGACAGACTAGAAATTGAGTCTGGAGATTGGGGATTTTCAGATCCTTCTATGAAATTGTATACAAGTCCATTTCAGCTTTATCTGGATGCAGGTTTCATCAAATATTAGTTTTCTGTTGTAACTATTTCATTCACACTGAAAATAACAAATACCATAGTGATTGTCTTTGATTTTCAAACTCAACTGTTTCCATTATGTTTTAAACCAATTCAGGTTCAGTTTTATTTTTTAAAGATAATCAATTATTTTCTTGTTTTTGTTTCTAACATTGCATCTATTTGAAATAAGCTCTCCACTCAGCACTAGTCTGTTACACTGCTGAGTTTACTAGTAGACTCAAAATCGTGTTGTTAATAGCTAGAGAGGATATTGTACCTTGTATTGTGTATAACAAGCTAAAGAGGCTAACATGCATGTGCAGCTCTATTACTCTTTTTCTCCTCTGGTGACGGGTCTCTATCAGTGTTTGTACAGTAAGTATCAGTGGGTAGTGATAGCTCTTTCCCCTTTAGATACAAATTTTTGTATTCATTTAATTCTATCACAATTTCTAATGCTGAACAAATTGTGAAACTACCAGCCAGCACTGCAGAAACACAAAATCTTGCACCAGATATTCCTTATGGGAAGAATTGTACACAACAAAATATCCCACCAGGACAGAAGTCACTGGGAGTTGATGCTATCTGCTGTTTTAAATAACAAAGATGTATGTAACTGATAAGGGAGTTCCTACTCTTGTAGCTCACTAGGGCTAGGTGAATTTATCTGCTGAAAACAAGATTTCCAAAGTTCCAGTGTTCCAAAATGAAGTTGTGCTTTTCTTCTAGCTTTCTACTTAGAAGTGACATGAACTGTGCAGCAGAGAAAAGAGCCCTAGACCACAGCACTGGAAATTTATGTGTTCTACAGTGATGGGTTTGAAGTCTCGGATAAGGGAAAATCATGGCAGGTTACAAGACTGCAGCAAAACTATGAGTGGAAAGGCTTAAAAGGCTATCATCTCTGCACAAAAGAAAACTAACATTAGTCTACTGTTATTCAAGTAACTAAATATTATGGCATAAAACAAGAGGTTTAAATTATGCAGTGGAAGACTGAAAAGGAACAGAATAATCTTACAGATCTTCAGTCCACATATGTTCATGTCATGCGTGCTACCTTTAATATCTTTAGCTTCAAATATATTCTCTGTTGCATGTATGGAAGATTCTCAGTAAATCATGCTTCACGTTCCTGACCATGTGCTTCTGCCATTTAACTGTGTCTCCTCAGCCGTTTCTGCATTCCTTTAGATGACAAAATGTGTGTAACATCTTTGTATGTATCCACGTGCTGATTACTTGGCCTTTTGTAGCAATTAAAACCTCTGTGTACATGTGTTTGGTTAAATAGTATAGCCGCTTGATGTTTTTACCAACCACAAGGTAACAAATACGTGACGGTAGGTATGATTTCAGGTGCTCTTTCTGACTCGAAAGCTGAGCTTTGTTTGATGAACAGCTTAAATATAACTTGTCATTTGATTAGTATAATTAGCAGTGAAATGAATGTCAGTTATTCGGGGGGTAAATCTCTTTTCTCCTCCCAGCCTCCAAGTTCTGATTAGATGTTGTTGTTGTTTACAG
Seq C2 exon
GGAACGTCTGGACCGGATCCAACCACAGTCTATGTTGATATGAGGGCACTGAGGCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]