DreINT0057282 @ danRer10
Intron Retention
Gene
ENSDARG00000025513 | dip2cb
Description
DIP2 disco-interacting protein 2 homolog Cb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-589]
Coordinates
chr2:42656212-42659640:-
Coord C1 exon
chr2:42659470-42659640
Coord A exon
chr2:42656274-42659469
Coord C2 exon
chr2:42656212-42656273
Length
3196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
CTGTTGTTGTATGTTTGCAGGGA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GCCCGAGGGATGGACCTGACCCGCGTGCGCTCCTGTGTGGTGGTAGCAGAAGAAAGGCCTCGTGTTGCTCTGACCCAGTCCTTCTGTAAGCTCTTTAAAGACGTGGGGCTTCACCCGCGCGCCGTCAGCACCGCCTTCGGCTGCAGGGTCAACCTCGCCATCTGCCTACAG
Seq A exon
GTAGACTAACACACAACTCTCACTCAATTCATGATCTAACTGCATCCCCGCTGTTCAGTTTTAATTTAACTTGTCATTTACCTCATTCTGCCATATGATTTCATTTTAAATTGTTTTAGTTTTTTTTTTTTTTCATTTGCATTTTAACTTGTTTCTACATCATCTGCATCTTCCTCTCCTCATGTAGCCTCATAGGTTGGGAAAACTTGCTGAGCAGGTATGACTGAACTTATTACAACCACGTTGGGCTGCTTTTACGGTCGGTGTATCTTTTGGTCTTTGAGTTTTCCTTTTAGAAACAGATAATGAAAGTGTTTTTTTATTTTTTCATGCTTCCTTTCAGAAAAAAATGATTGACCATTTTGATTCCAAAATGCATGATGAAATGACTTGTTAAAATGTGTGCAATAATTCCAAGCGAATGTAAAAAAATTTTTCCTGAAAAGTCTTTATTAAAGGGCCATGAATAAACATAAACAAAGAACATTGATCACACATTTACCAAATCCGTAGAGACAGTATTATTAACACTAACTGGAATTGCATCTGTTTTTAAAAGGAGACAAGTGGCAAATCCGGATTTCACCATTTCCAGATGAGAAAAGCTCTCGGTTCCTTACAAACGTATTTTTGTTGCGTGTTAGCAGACCACTGTAATCCACACATGTGGGTCCACACACGAGCTCTTATCATAGGGAAATGGAAACAAAACCTTCGTTGCGGCACATTTATAAACGCAACACTAAAGACCCATGTCTCCAAACAATTCTTCTTCTTCTGCTTGTTTGAATTACGATTGGCAACACAACGTGGCATCTCACTGAACACTGTGAAAGGTTAAAGGAGTCTTCGAAGCTATCATCCATATCAATAAAGTTGTATCTAGTTCACTTTATAGCACGCTGATTGGTTCGAACCTAGCCTTCCTCATGAATTAATGAACAGATGTGCTGAAAACTCAATGACGTTACTTTGTCAAATAACAGCTTGTTTTTGTAATTGTTTTTATTTCAGTACATTTTTTTTTTACAAATTTTAATATCCGTTTTTAAAAGGAAAATCCAATGACCGAAAGATACACAATCGTTTACACTAGTGCATTTTCATTTTTAAAACAGCATTTTAGAACGAAAACGCGTCTCGTCCAGAGTGGCGTTTTTACTGCATTTCTATAAAACGGTTTTCATCCACACTATACAGACTTAAACACATTATAGGCGACCATTCACACTCTGTACATCTGTACTTGCATTCTATCACTTGCGTAAAGGTCATATAAAAGGCAATTAAAGAATCATAGAAACCATGTACAATAGTCTAAATGAACAATCAGAGAGGGGTTATGGATAGCCACGCCTCCATTTTCAAGTTTGCATTTCACTCAATCTATCCTGAAGCAGAAAAACCAGCATTTCTGAACTAAAAAACTGTCTCCGTGTATTTTTTAAATGATTTTTATCGTGAGTCAAAAATGCTGGAATAGTGTGGATGCCAGGTGTAGCTATATGCGTTTTAAAACTAAAATTGCACTAGTGTAAAGGCACCATAGTTTGGGGAGTAAATCTACTAATTATCCTCCTGTATGCATGAATACTCTGCAAACTAATGTTATAACTTCACCTCAAATGACTTCATGTTCACTGGTCTTGCTTTGTCTGGCATGTCCAGAGCTGTTCAACTGGTATAATCTGTTTGTGTAAGCATGCGTATCTCCAAATATAGTCAAAATTTTGTCTTTTTTTGCACACAATTAGTTTTATATTAATATTAAGTCAAAATATTTTGGACTTTTATTATTATTATTATTATTATTGATATTATTATTGTGCTAAACAAACACTTATTAAATTAAAAAATTTAGACCTTTATTGTTTATTTATTATTTTCTTATAAAATTTTTTTTTAATAATATTATTGTACTAAATCAACTCCTTATAAATCTAAATATTGTTTTGACCTTTATTATTATCATTATTAATTTTAATACTAATATTATTATTAATACTATTATTATTGTTGTTGTTGTTATTATTGTGCTAAACAAACACATATTAAATCTAAATATTTTAGACCTTTATTGTTATTTATTATTAGTTATTTATTCTTTATTATTATTTTTATATTATTATTGTACTAAACCAACCCCTTATAAATCTAAATATTATTTTGGCCTTTATTATTATTAATTTCATTACTATTATTATTATTATTATTATTATTACTAAACAAAACCTCACAATTACACTAGTTAGTTTCCATTTAATTTTTTAACCTTTTTTTTATAAAAATCAGTTTTTTTGTTTTTAAATAAAGCAGCATTTCCATCCAATGTGTTCCCAACAAACAAAAGCGGCACTTCCTGGAAAACTGCTTCAAATGATTCGTAGTAAACATGGAGGCCGCTGCAGCAAGAGGAAACAACACTAGATCTATGTTCCTACATAATAAATGACATCCACTTGAAACAACACACAGAACGACACACACAGTAACAAATGTTGTTAGGATGTCTTATATTTGGGTGGCTGTTGTTTAAGAGGTCATTTAACAAATCATGTTCAGGCTTTTAAGAAAATTGATCAATGAATAATCTGCTGATTAGTCCAGTTAACCAATTACATGATCTGTTGCTAATTAATTTGTTTTAATTATTATGTTTAATGTCTACCTTAAAATACTTCTCATGAATCTTGCCGATTTCATCCAGCAGTTTTATGGGGTATTCCAAAATACTCATAAAAAGATGTGATACTGTATGTGATTCAACTTTAAAACATTCAACCAGAAATGAAAGATCTGTCAGCGTTTGCTCAGTTGTTCCAGATTGTCTGCTTTCCAACATTCTTCACAATATCTTCTTTTGTGTTTAATTAAAATAAAGAAACTAAAGACAAATTTGGAACAAGTGAAGGATATTTAAATGGTGACAATTTTCAATTTTGGAAAATCAGTTTATCTTATATTTTGTTTTTGTTGCAAGTTATGTTCAAATCTATCATCTTTGGCCTAAAATATATCTACCTTCCTTTCTTCTGGTTAAATCTTCTTCATACACTATAAATCTATACCCGTTTCACATTACTTTTAATGCAAGTCACATCCACAGTAACTTTCTCTCTCCCGGATAAGCATGATGCCTCATGTTTAAAGTATATTTAACAGTCATTTACAGAGTTCTGTTGTTGTATGTTTGCAG
Seq C2 exon
GGAACATCAGGACCCGATCCTACAACTGTCTATGTGGACATGAGAGCACTGAGACACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025513:ENSDART00000141399:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.1=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]