DreEX0027052 @ danRer10
Exon Skipping
Gene
ENSDARG00000025513 | dip2cb
Description
DIP2 disco-interacting protein 2 homolog Cb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-589]
Coordinates
chr2:42656212-42659640:-
Coord C1 exon
chr2:42659470-42659640
Coord A exon
chr2:42659253-42659282
Coord C2 exon
chr2:42656212-42656273
Length
30 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCTCTCCTCATGTAGCCT
3' ss Score
8.08
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCCCGAGGGATGGACCTGACCCGCGTGCGCTCCTGTGTGGTGGTAGCAGAAGAAAGGCCTCGTGTTGCTCTGACCCAGTCCTTCTGTAAGCTCTTTAAAGACGTGGGGCTTCACCCGCGCGCCGTCAGCACCGCCTTCGGCTGCAGGGTCAACCTCGCCATCTGCCTACAG
Seq A exon
CCTCATAGGTTGGGAAAACTTGCTGAGCAG
Seq C2 exon
GGAACATCAGGACCCGATCCTACAACTGTCTATGTGGACATGAGAGCACTGAGACACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025513_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.140
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCTGACCCAGTCCTTCT
R:
GGATCGGGTCCTGATGTTCC
Band lengths:
127-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]