GgaEX0009498 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9927527-9936629:-
Coord C1 exon
chr2:9936459-9936629
Coord A exon
chr2:9929269-9929298
Coord C2 exon
chr2:9927527-9927588
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGCTATTCCTGCTGCTATAGCCT
3' ss Score
4.83
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCAAGAGGACTGGACCTTTCACGTGTACGAACATGTGTAGTAGTGGCTGAAGAACGACCTCGGATAGCTCTTACTCAGTCATTTTCAAAATTATTTAAAGACCTTGGCCTCCATCCGCGGGCAGTCAGCACATCACTCGGCTGTAGAGTTAACCTGGCCATATGTTTGCAG
Seq A exon
CCTCACAGGCTGGGGAAGCTGGCCGAGCAG
Seq C2 exon
GGAACGTCTGGACCGGATCCAACCACAGTCTATGTTGATATGAGGGCACTGAGGCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.190
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSGALT00000010760fB1041
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTTGGCCTCCATCCG
R:
GCCTCAGTGCCCTCATATCAAC
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]