BtaEX0011383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47157695-47165219:+
Coord C1 exon
chr13:47157695-47157865
Coord A exon
chr13:47163729-47163758
Coord C2 exon
chr13:47165158-47165219
Length
30 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCCTGCTGCTGTAGCCT
3' ss Score
6.31
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCACGAGGACTGGACTTGTCCCGCGTGCGGACCTGTGTGGTGGTGGCAGAGGAGCGGCCCCGAATAGCACTCACCCAGTCTTTCTCGAAACTGTTCAAAGACCTGGGCCTCCACCCGCGGGCCGTTAGCACCTCGTTTGGCTGTCGAGTGAACCTGGCAATTTGCTTGCAG
Seq A exon
CCTCACCGGCTGTGGAAGCTGGCCGAGCAG
Seq C2 exon
GGAACATCGGGGCCCGATCCGACCACCGTCTATGTGGACATGAGAGCTCTGAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.119
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSBTAT00000015282fB2156


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCAAAGACCTGGGCCTC
R:
GCTCTCATGTCCACATAGACGG
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development