MmuEX0014718 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9636341-9646286:+
Coord C1 exon
chr13:9636341-9636511
Coord A exon
chr13:9644714-9644743
Coord C2 exon
chr13:9646225-9646286
Length
30 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTTGCTGCTTGTAGCCC
3' ss Score
7.58
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCACGAGGCTTGGACTTGTCCCGGGTAAGAACCTGTGTGGTTGTGGCAGAAGAGCGTCCCCGAATCGCCCTTACACAGTCTTTCTCAAAGCTCTTTAAGGACTTGGGTCTCCACCCACGAGCTGTTAGTACTTCATTTGGCTGCAGAGTGAACCTGGCAATTTGCTTACAG
Seq A exon
CCCCACAGGCTGTGGACACTGGCCGAGCAG
Seq C2 exon
GGGACATCAGGACCTGACCCCACCACTGTCTATGTTGACATGAGAGCCCTGAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'37-41,'37-40,38-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.067
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCACGAGCTGTTAGTA
R:
TGTCTCAGGGCTCTCATGTCA
Band lengths:
118-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: