HsaEX0019765 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:310031-327176:-
Coord C1 exon
chr10:327006-327176
Coord A exon
chr10:311537-311566
Coord C2 exon
chr10:310031-310092
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTCTGCTGCTGTAGCCT
3' ss Score
6.55
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCGCGAGGGCTGGACTTGTCCCGAGTGAGGACCTGCGTGGTTGTGGCGGAAGAGAGGCCTCGGATCGCACTCACACAGTCGTTCTCAAAGCTGTTTAAGGACCTGGGCCTTCACCCGCGGGCCGTCAGCACCTCGTTCGGTTGCAGGGTGAACCTGGCGATTTGCTTGCAG
Seq A exon
CCTCACAGGCTGTGGACCCTGGCCGAGCAG
Seq C2 exon
GGAACCTCAGGACCTGACCCAACCACTGTCTACGTGGACATGAGAGCCCTGAGACACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'99-104,'99-103,103-104
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.143
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTTTAAGGACCTGGGC
R:
ACGTAGACAGTGGTTGGGTCA
Band lengths:
119-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development