HsaEX0019765 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:355971-373116:-
Coord C1 exon
chr10:372946-373116
Coord A exon
chr10:357477-357506
Coord C2 exon
chr10:355971-356032
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTCTGCTGCTGTAGCCT
3' ss Score
6.55
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCGCGAGGGCTGGACTTGTCCCGAGTGAGGACCTGCGTGGTTGTGGCGGAAGAGAGGCCTCGGATCGCACTCACACAGTCGTTCTCAAAGCTGTTTAAGGACCTGGGCCTTCACCCGCGGGCCGTCAGCACCTCGTTCGGTTGCAGGGTGAACCTGGCGATTTGCTTGCAG
Seq A exon
CCTCACAGGCTGTGGACCCTGGCCGAGCAG
Seq C2 exon
GGAACCTCAGGACCTGACCCAACCACTGTCTACGTGGACATGAGAGCCCTGAGACACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.143
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(38.8=100),PF139001=GVQW=PU(10.0=3.4)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=PD(4.3=71.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTTTAAGGACCTGGGC
R:
ACGTAGACAGTGGTTGGGTCA
Band lengths:
119-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)