RnoEX0027977 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63779813-63790035:+
Coord C1 exon
chr17:63779813-63779983
Coord A exon
chr17:63788467-63788496
Coord C2 exon
chr17:63789974-63790035
Length
30 bp
Sequences
Splice sites
3' ss Seq
CACGCTCTTGCTGCTTGTAGCCC
3' ss Score
7.17
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCACGAGGACTGGACTTGTCCCGAGTAAGAACCTGTGTGGTTGTGGCAGAAGAGCGTCCCCGAATCGCTCTTACACAGTCCTTCTCAAAGCTCTTTAAGGACTTGGGCCTCCACCCACGAGCTGTTAGCACTTCATTTGGCTGCAGAGTGAACCTGGCAATTTGCTTACAG
Seq A exon
CCCCACAGGCTGTGGACACTGGCCGAGCAG
Seq C2 exon
GGGACATCAGGACCTGACCCCACCACTGTCTATGTTGACATGAGAGCCCTGAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.095
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSRNOT00000020634fB4179
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTTAAGGACTTGGGCCT
R:
ATAGACAGTGGTGGGGTCAGG
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]