DreEX0027043 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27128023-27137884:+
Coord C1 exon
chr24:27128023-27128193
Coord A exon
chr24:27130139-27130168
Coord C2 exon
chr24:27137823-27137884
Length
30 bp
Sequences
Splice sites
3' ss Seq
CCGTCACCTGGCTGTTGTAGCCG
3' ss Score
5.37
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCCGTGGTCTTGACCTGTCCCGTGTTAGGACGTGTGTGGTTGTGGCTGAAGAGCGGCCACGGATCGCCCTCACCCAGTCCTTCTCCAAACTCTTCAAAGATCTTGGCCTTCACCCGCGAGCTGTCAGCACTTCCTTCGGCTGCAGAGTCAACCTGGCCATCTGCCTGCAG
Seq A exon
CCGCACAGGCTCGGGAAGCTTGCTGATCAG
Seq C2 exon
GGGACGTCAGGACCTGACCCGACTACTGTATATGTGGACATGAGAGCCCTCAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.079
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATCTTGGCCTTCACCCG
R:
TGAGGGCTCTCATGTCCACAT
Band lengths:
127-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]