BtaEX0011361 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147968269-147970245:+
Coord C1 exon
chr1:147968269-147968439
Coord A exon
chr1:147969444-147969473
Coord C2 exon
chr1:147970184-147970245
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTTGTGTCTGTCAGCCC
3' ss Score
6.91
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGAAGGGCGTGAACCTGTCGTGTGTGCGCACCTGCATGGTGGTGGCTGAGGAGCGGCCCAGAATCGCGCTCACACAGTCCTTCTCCAAGCTGTTCAGAGACCTGGGCCTGCCCGCGCGCGCCGTGAGCACCACGTTCGGCTGCAGGGTCAATGTGGCCATCTGCCTCCAG
Seq A exon
CCCAACAGGCTGGGAAAGCTGGCTGAGCAG
Seq C2 exon
GGCACGGCCGGCCCAGACCCCACAACTGTCTATGTGGACATGAGGGCACTGCGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'36-45,'36-44,37-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.016
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSBTAT00000061028fB2152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGTTCAGAGACCTGGG
R:
TAGACAGTTGTGGGGTCTGGG
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development