DreEX0026994 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:591380-595816:-
Coord C1 exon
chr9:595646-595816
Coord A exon
chr9:593320-593349
Coord C2 exon
chr9:591380-591441
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATCCCTCTCGTCAGCCC
3' ss Score
5.92
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTACGTAACGTGAACCTGTCGTGTGTGAGGACCTGTATGGTGGTGGCGGAGGAGCGTCCTCGTATCACACTCACTCAGAGTTTCTCCAAGATCTTCAAGGATCTGGGTTTGTCCACTCGCGCCGTCAGCACCACCTTCGGCTGCAGGGTCAACGTGGCCGTCTGTCTACAG
Seq A exon
CCCAACCGGCTGGGCAAGCTGGCGGAGCAG
Seq C2 exon
GGCACGGCGGGTCCGGATCCCACCACTGTATATCTGGACATGCGGGCGCTGCGGCACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'38-40,'38-39,39-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.016
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSDART00000115030fB2297
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGGTTTGTCCACTCGC
R:
CGCCCGCATGTCCAGATATAC
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]