HsaEX0019733 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47978136-47980696:+
Coord C1 exon
chr21:47978136-47978306
Coord A exon
chr21:47979747-47979776
Coord C2 exon
chr21:47980635-47980696
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTGGCCTCTGTCAGCCC
3' ss Score
3.5
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGAAGGGGGTGAACCTGTCATGTGTGCGCACGTGCATGGTGGTCGCCGAGGAGCGGCCCAGGATTGCGCTGACCCAGTCCTTCTCCAAGCTCTTCAAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTTCGGGTGCAGGGTCAACGTGGCCATCTGCCTCCAG
Seq A exon
CCCAACAGGCTGGGAAAGCTGGCTGAGCAG
Seq C2 exon
GGCACAGCTGGCCCGGACCCCACAACCGTCTACGTGGACATGCGGGCACTGCGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.040
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTCTTCAAGGACCTGGG
R:
GCATGTCCACGTAGACGGTTG
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)