RnoEX0027940 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13119464-13121777:+
Coord C1 exon
chr20:13119464-13119634
Coord A exon
chr20:13120749-13120778
Coord C2 exon
chr20:13121716-13121777
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCCGCCCTGGCCTCTGTCAGCCC
3' ss Score
3.47
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGAAGGGGGTGAACCTGTCGTGTGTGCGCACGTGCATGGTGGTGGCTGAGGAGCGGCCCCGGATCTCGTTGACACAGTCCTTCTCCAAGCTATTCAAAGACCTGGGCCTCCCTGCTCGCGCTGTGAGCACCACCTTCGGGTGCAGGGTCAACGTGGCCATCTGCCTCCAG
Seq A exon
CCCAACAGGCTGGGAAAACTAGCTGAGCAG
Seq C2 exon
GGCACAACAGGCCCAGATCCCACGACGGTCTATGTGGACATGCGGGCACTGCGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.060
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
ENSRNOT00000066017fB4174
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTCAAAGACCTGGGCCT
R:
ATAGACCGTCGTGGGATCTGG
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]