MmuEX0014698 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76270396-76272703:-
Coord C1 exon
chr10:76272533-76272703
Coord A exon
chr10:76271376-76271405
Coord C2 exon
chr10:76270396-76270457
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCCGCCCTGGCCTCTGTCAGCCC
3' ss Score
3.47
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGAAGGGGGTGAACCTGTCGTGTGTGCGCACATGCATGGTAGTGGCTGAGGAGCGGCCCCGGATCTCGTTAACACAGTCATTCTCCAAGCTGTTCAAAGACCTGGGCCTCCCTGCTCGTGCTGTGAGCACCACCTTTGGGTGCAGGGTCAATGTAGCTATCTGCCTCCAG
Seq A exon
CCCAACAGGCTGGGAAAACTAGCTGAGCAG
Seq C2 exon
GGCACAACAGGCCCAGACCCCACGACCGTCTACGTGGACATGCGGGCACTGCGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.048
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTTCAAAGACCTGGGC
R:
ATGTCCACGTAGACGGTCGT
Band lengths:
125-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types