GgaEX0008887 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6907286-6910579:-
Coord C1 exon
chr7:6910409-6910579
Coord A exon
chr7:6908499-6908528
Coord C2 exon
chr7:6907286-6907347
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGGTCCCACTGTCAGCCA
3' ss Score
3.69
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGAAAGGAGTCAATCTGTCCTGTGTGCGAACATGCATGGTGGTTGCAGAGGAGAGACCAAGGATTGCATTAACACAGTCTTTCTCCAAGTTATTCAAAGACCTGGGTCTCTCTGCTCGTGCAGTGAGCACTACGTTTGGATGCAGGGTCAATGTAGCAATTTGCTTACAG
Seq A exon
CCAAACAGGCTGGGCAAGCTGGCTGAGCAG
Seq C2 exon
GGAACAGCAGGACCAGATCCAACAACAGTCTATGTAGATATGAGAGCACTTCGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'48-50,'48-48,49-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.010
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAGCACTACGTTTGGA
R:
TGTCATGTCGAAGTGCTCTCA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]