GgaEX0009498 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9886501-9896252:-
Coord C1 exon
chr2:9896082-9896252
Coord A exon
chr2:9888243-9888272
Coord C2 exon
chr2:9886501-9886562
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGCTATTCCTGCTGCTATAGCCT
3' ss Score
4.83
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCAAGAGGACTGGACCTTTCACGTGTACGAACATGTGTAGTAGTGGCTGAAGAACGACCTCGGATAGCTCTTACTCAGTCATTTTCAAAATTATTTAAAGACCTTGGCCTCCATCCGCGGGCAGTCAGCACATCACTCGGCTGTAGAGTTAACCTGGCCATATGTTTGCAG
Seq A exon
CCTCACAGGCTGGGGAAGCTGGCCGAGCAG
Seq C2 exon
GGAACGTCTGGACCGGATCCAACCACAGTCTATGTTGATATGAGGGCACTGAGGCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'30-34,'30-33,31-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.190
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
PF0050123=AMP-binding=FE(1.9=100)
C2:
PF0050123=AMP-binding=FE(4.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTTGGCCTCCATCCG
R:
GCCTCAGTGCCCTCATATCAAC
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]