GgaINT0101094 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:30574055-30577861:+
Coord C1 exon
chr2:30574055-30574152
Coord A exon
chr2:30574153-30577753
Coord C2 exon
chr2:30577754-30577861
Length
3601 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CACCTAATGATCTTGGGTAGATT
3' ss Score
3.69
Exon sequences
Seq C1 exon
CCTTCCAGGCTGCAAACAAAAAAAGATACCCATTCAGTACTAGAGGTCTCATTGTTTGCATCAGAGTCCCTTGCAACTATTTAGGCACTCTCACAGAG
Seq A exon
GTCAGACACGGTGGTCAGGTAAGCGCACGCCAAGGTTAGTCTGTCTCAGTCAGCTGTTCATACTGAATGATGGGGATGCAGTTTTTCTCTGAAGCAGTTATTTGGATATCTGGCATTATGAGGTTCTGTTGCTGAGCATGAAAATAAGCCAGATCAAAGCTTCTTTCTTCTGTTTTTTCCTAGTGGTGGGTGCCTGAACTTTATAATATAGGTCAAACCAGTTCCACATCAGTAGCTAAGGGGGGAAAAAAATGCCCTTCATTATGTTAACAAAAACAGTGGTTTACATGTGCATATATGCCAAATTCATTAGGCAGGTAATGAAGCATTTGCACAAATGTAATTACATAGAGCAATTCTGACAGTTCATAACACTGCATTAATAATCACTACAATTAGTTCTGATGATGGAAGCAATTTACAGCACGTCACATGTATAAATAATGGTGCATTTCCTGCATGTGTCATTATTATGTATTAAGGATGCCACCTTGTTGTGACTTTCTCAGTAATGTTCCCCTTGAGTCGAAGTTAAGGGTAGATGAGTGATTTTATTTCTGAGCTACAGCATATTTTACACTTGTATAGTTTAAATACTCAGTTGAGGTCATTTATGTAAGTTCTGTAAATGCAGTGTCTAAATAATTGCAATAATTATTTATTGCTGAATAATGTGGTTAGTACTGAACAGGTCCTCCTATGGTCAGAATTTAATGAAATATAAGATATATTTATAGCCTTAAAGAAAAAAAAAAGAGAGAGAGAAATATTACCCCTTGGTGATGTGCTTTCCTCTGTATCTCCTAACTTGCAATTACTCTTAGAAATTAATTTTCCTTTTTAATTTTTCCCCTGCTGACCTTTTTTTAGCTAATAGGACACAAAAGCAGCTTTCCTTTCTGTGGTACTTGGTGTCACTTTGAAATAATTGCTTAATTTTATGGTGATGATTTAATAATGTTTCCCATTTAGAAAACAAGTCTTTAAAATCAGCTGATTCCAACTCTTAGTTCTCTTTGCTAATAAATCTTACTGCTCTTTAAGCTCAGTTCTTTTCAAACCACAATTCATAAGCTTGATAATTAATTCTGCTAATTAAAGAGAGGGAGGATTCTGATGGCAGGAAGGACTAGAAAGGTCTGTAGGAGCAAGAATTATTTCAGCTCTCCCTTTGGTAATAATGCTTATTGGCCCTTTTCATTGTGGAGGTTAGTGATTCATTACACTGTGGCTTTATCTGCATTTTTTAACATAGATACTGTACAGAGAAGAGCGAAAAGTTTTACGAAATGCAACCTCGTAAGCATATGCACATGTGCATATGTGTGTGCATACATATATATTGATACAGCTCCCAGTTTGATACTCTCTGGGGACAAACTTGTTTCATACAAGTAGGGATTGAGTAGTGTAGCAGAAATGCTAAGTCACAGCTTTGAAACAGTGACTGACCACCTGGTGGGAAGGCAGGGCCAACCTGGAGGAGCTCAGTGCATGCAGTGCTTCTGAGTGACCGAAAGGGCTGGAGCCAGGATCCATTCCTTCCCAGATCTCATTTAAGGGTTGGCAGTGGAGGCAAGGGTACCTTGCTGGAAGCCCTTACCTACCTGAGGCCTTACAAAGGTAAGCAGATGTTCTTTTTGTTTGTTTGTTTCTGCATCCACGGCTGCTGCACAGGGCTTGTTCTCATTTGCTGCAGCCTCAGATTGTGCCACCCCACTATTATTGCAGTACTTTCCATCACACTACAGCATTACAACCAGGAATAATAGACTAGAAAGCATTAGCTAGCCCATCAGCTACTGCAGTGTCCCATCTCCCATCATTGTTGGCATCAGTTTGTGCTGTGAATGAAAATTTAACATTCTTGTATCTCAGTTGGACTTAACACATTTCCCCGTTGGAAAGATGCATTCTGCCACACTCACCTCTGACAACTAAGGTGAAGTGCAGGATGCCTGGTCTTACCTCAGTGTCCCACTTTTTCCCTCCACTGTCTTGTCCTTGTGTGCACATACATGGAACTGTTTGGTGCTGAGGGGGATGTGAGCTCTGGCCGCTCTGTATCCAACCAGTGAGCAATGGCTCAGGCCTTTCTGAATAGAAACAGACCAATTTTTCTTAATTAGAACAGCAGTTACGCAAACCTGACAGCCCAAAGAATTTCTAATTCAAAGCCCTCACTTTTCTTGCAGCAGTGAAAATGTCCCTCTTATATTATGAGCTTTGATTGTTCCCATGTAATCAACGTTTCTAAAGGTACGTGTCTGAATGAGCCTGTACGGAGTTCGAATACTGATATACTTTTCCAAAAGACAAAGGGAAGCAACCATTCCTTCAGAGAAATATATTTGAAATTTAAAAAGTATTAAATGTGCTTTTATTGCCGACCAAGAGAGGCAAGTTTGTTCTGACTGCAAAGATGTTCCATTTTAAGCCAAAGTTGTTGGTATTTTTCGCAAGGATCCTCTGCTTAGGCTTCTCATCACCGAGGTGTGACAGTGCTCATTACATCCTGGCAGCCCCTTTTTCCTTCCTTTCTTCCTTTTTTTCCTCCTCCATCCTCTTCCAACCAATTTAAAAGAAAGATGGATTTGAGCCTCATGTATTCCAATTGAAACAAAGTTGCAGCAAGCATACTGGAATAGCAGCAGCTATTTTACGTGTTCTGTTCTGTCACATCATGTAATATTTAAAGCCTATAATTAAGTTTTTACTTGAACTGTTGGGAGGCAAATACTGCCCCCAAGGGCGTAAAGGTTCCTGTCTGGAAAGGCTTCATCACAAACTGGCATATTTTGCAAACCAAAGGGTAGCAAAAAGAAGCTTCAAACTCTGTGAAGCCAAATAAAGCAGAGAGACAGTAGTTCCTTGAATAAAATGTGTTACTGCTGTTAGTCACAAAGCATAGCAGCAACATTATGACTGGAGTTCTACAATAAACATAATGCTTATGTGATGTGGCAGTAATGGGATTAATATTAATTCAATTTTTACTGAAGTTTTTGAATACATCCCAAATTCAAATGAAGTAGAATTTCAGTTACTTGGTGTTTCCTAGTGAGGCAATATAAAAGGCTGCAATCAGATACAAGCTTTTTATTTCTCCTCTAAGAAAGGCACAGTAGGTTACCTTCCTGTCACTCACGAGGATTACGTTTTTAAAGATCTGCATGGGAAAATACATTCACTTGTTAATGAGTTGTGTTCTCTTATATCATGCAGTGTTTTGAAAATGTACCTTTCTCCTTAAAGCTTTTTATGAGGGATAGGTTAGAAAATATGACGTTAGGCTCAGATGATACTGCTTTACACTGTCAGACAATTGTAGTCATAAACTTGATATTACTACTCAGGTATTTATAGGTACCTCTTGCTGGAGTGAAAAAAAGAATAGAAAGAAAGAAAGCCAGAAAATCTGTGCTTCAGTGTAGTTCTGTTCTAAACAACAACAACAAAACAACAGTGAGAATATTTAACTATGAAAGCTTTGTGGAAGTATTGGATTTTCTTTTGTTTCTCTTAGCAGTATTTATTCTGAGCAGCTTTGATTTATTCTTTTGAAAAAACTGATGTTGTTTCACCTAATGATCTTGGGTAG
Seq C2 exon
ATTCTGCAGGAGGATTTGGGTTGTCTGTTTGGTGGCCACACCACCAGTGCCTGGGACTGCCGGCTCTGCTTCATACATTTGCCAGAATTCATCACCTTGTCTGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906:ENSGALT00000017738:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]