GgaINT0101751 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38452484-38453393:-
Coord C1 exon
chr2:38453260-38453393
Coord A exon
chr2:38452730-38453259
Coord C2 exon
chr2:38452484-38452729
Length
530 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTAATCTCTTTTATACAGGGA
3' ss Score
8.06
Exon sequences
Seq C1 exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
Seq A exon
GTAAGTAGTGACATTGGCATTACCTTGATGAACTGTGTAACTTAAGAGACTGTTGGATTACTATAACTGAAAACAGATGTTTTGAAAGTAGATGACTATGAAGATATAAAGGCAGCAGCAAGAAACTGAGCTGTGCATGTGGTTTGGCAAAGCTCTGAGGCACTCATGCACAGGTGGGAAAGCCAGTGGTGAAGTTGGTGGGACTTAGTCAGAACTTAGTTTTTATCTTTCACGTGGGGATGGCTGGCTTTTGATTCTGCCCCTGGGGAAGAACTATCCAAATTGTTCTGGACACTGTGTGGATGTTCTGTTGGGAAAGGCAGTTGCACCTTCAGTCCTAGAGATACTCTGCAGTGTTTTTCAGGACCGGGGGAAGATAAAAGTTTCAGCTTTCTTCAAAACTAGCATCAGGGATGAGAAAAGTTGTGAACACCTGCAGAGGTTGGCCTCAGTATCCATTTTCAAACAGAATATGATAATAAATGATTTTAGACTCAGTTAATTGTTTCATTTTAATCTCTTTTATACAG
Seq C2 exon
GGATTATGGGCTTTCCTACCTCTCCCTACGAACTAGCATTGGTCTGTGGACTGCGTTTTTATGCATAGTGCTTGTAGCAACAGATGCCAGCAGCCTTGTCTGTTACATCACTCGATTTACTGAGGAAGCTTTTGCAGCGCTTATATGCATCATATTTATTTATGAGGCATTGGAAAAGCTTTTTCATTTGGGAGAAGTGTATGCCTTCAATATGCACAATAATTTGGATAGACTGACTTTATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCTCTTTGGAGCCTCGT
R:
TGTGCATATTGAAGGCATACACT
Band lengths:
342-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]