GgaINT0103004 @ galGal4
Intron Retention
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132823595-132827078:-
Coord C1 exon
chr2:132826899-132827078
Coord A exon
chr2:132823661-132826898
Coord C2 exon
chr2:132823595-132823660
Length
3238 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CATTCATTCTTTTATAACAGCTG
3' ss Score
7.61
Exon sequences
Seq C1 exon
CTCACAGCTGTAAACAACCAGAAACACCATCTCATGCAAATGTTGCAGGAATGGATCTTCCCTCACTTGGCTATACACTGATTTACACTTGTCAGCCAGGATTCTTTCTGGCAGGAGGATCAGAGCATAGGGCCTGCAGATCTGATGGCACGTGGACTGGGAAAGTTCCAGTTTGTGAAG
Seq A exon
GTAACCTCTTTCCTGTTGCAACTGTCATCTATCACATTTCAGCAGTATTCTTTACTTGCTATCTAATAAGGTGAGGTAGGAACTAGGAGAGCAAATATCTAAAAGGATAGTTCTAAACCTTTGTCAGTTGTGTTCAATGGGACAAATGCTTTTGTCTGCATATGTTTCATTTGCATGCTCAGAGGTGTGAATTGCAGATAAGATTATAAAATTCTGGGGTCCAGGTTAACACCTGTGTTTAAATTCCTGACTGGGTCAGGTGTGGGCTACATTCTGATAGCCTTGGTGGAATAAAAACCTCAATGTTTTTTCACATACATATTAAGCTTAGACGAGGGTAGGTTTATTGTAGTAGACTGCGCCAGCTGCAAAACAGCTGAGATTGTTGCAATATTAGAGAAGGATGCTTACTGAAGCTTAAGTAGAGGTCTTAATTATTATATGGAATGAAAGCATAGGGCTTACTGTTTCATATTCAAATAAAAGCAACAATATACTACTCACAACGAAAATAAATTTATTTACTTTGGTTTTCCAAAATTCTATTTTGTTTATGGTGTGGTTGGTTGTTTTGGTTTTTCTGTTTGTTTGTTTTGGTTTGGTTTTTTTACATATTTTGGCATGATATGGCATAAAAATTCTCACAGTAAAATCGTGATGAGAATGGTATTTTTTATGTGCAATAAGAAATCCACAAGTATAGCAACTGTTTGGACTTTCAGTTCCTGAATAATTAAAGAACTGATTACTGATACATAATGTTTCAGATGTGGTTATCCCCAGGGCTCCTAGAGAGACATACAGAGGCTGTATAACCAACTGCTGCCTTTTGGAAGGGGAATTCACTTCACAGGAAGTGAATATTTTGTATTACTAAAAAACAGGTGTCCTGGCATTATATGCCAGGCAAGTGCTGAGGGAGAACAGAGCAGAGCTTTGGGAAAGTGTTAGGAAGCAAGTTGCCAAGAAGCCCATGACTTCATTACTGTTCCGGAAATGTTATGGCAGGCCAAATGTTATTCATGGGTTGTATATTGATCCAAGAATTTTCTGCTGATGATACTGAAACAAGTAATATTAACTGTCTCTCTGATTTAAGAAATCTTGAGAACATTTTTTTTTTTTTTTAATTTTCAGTTGTAACTATTAGTGTATCCACCTTGTCATATTATTGTTTCCCAATGTCTTGAGGAAATGGTGCCAAAATGCAAAATTTTCAAGATCACTTATCTTGTTTCTTGCTCTTCAGCAGCGGTAAAAAAAAAAATACCAATAAGTGACAAATTGTAAACTATTAACTCTAATGAGATAAAGTAAAATGTCTCCTAAATATTTTCCATTTTACCTAGAATCAGAGAATCATAGAATCGCTAAGGTTGGAAAAGACCCACAGGATCATCCAGTCCAACCATTTGCCCTTCACCAATGGTTCGCTCTAAACCATGTCCCTCACCACAACATCCAAACGCTCTTTGAACACCACCAGGGTCGGTGACTCCACCACCTCTCTGGGCAGCCCATTCCAGTGCCTGACCACCCCTTTCAGAGAAGTAGGATTTCCTAATGTCCAGCCTAAATATTCCGTATTACATAGGAATCAGAACATATTACAACCTATTACATAGATGGATGAAACATCTCTCCTAGAGAAGAGAGAAGACAATGCTCACATGTGATGGTGAACTTTACAAATAAGACTTGGAAAAGGATGAAAAGGAATGAAAAATTTGGACTTTAGATCTAAAAAAGGATATTTAGGAGAATTTAAGCAGAATTTGTACTTTTAAACGCAAAATTGCAGTATTTAAAGTCCTACTTAGTAAATGTCTGGACCCAGAAACTTTAACTCCATAGATAATGTTTTAGTTTTGGTCTTGTACTTAAAATCTTAGTTCTGAACTTTACTAGAAATGAATCCACCTTGACAAGGCCGGTTAACTCAAAGCTGTTTATATTAAAGCCTTTTGAAAACTGAGATCCAGTCATTTCTAACCTGAGTTTGATGCAATCAAAAAACATAATTCTCAGTCACATCCTCCAAATCATCCATGTTTGGTGAAGTTCGGCAAGTTTCTTTTAAAAGAGACAGGAAGTTAAAGATTTATCAATTTAACAACAACCATCAGGTCATGAGAAATTTATGTTTAATTCAGCCCACCTGCCCTTGCTGCAAGCTAGCTTTAATCTTTACAACAAGAGCAATACTTCTGTAATGAGCTAAAAGTTATTCTTAACACACTCAAGAAAAATATTGTCAGTGATTCCTGTTGAAGTATTGATCAGGAAGAGAGGATTGTGTTCCAAACCAAGATCCAAAACAATCCAAAATAACCACTAGAGCAAGGAATGGAGCCCAGTGTACCATGAGTACCCTACATTAGAAGACAGAATTATATGCTTTGTAGCCAAGTAAATCCAAATTATTTCTGCAAAATAAAACAGCTTCACTTGGAGGAAATGGCACTTCTCCACCTTCAATGATGGAAGACTTTCTGCTTTAGGCAGCAAAGAGCTGAAATTCAGGTCTCTAACTTCTAGTGCTCAAAATCGTCTGAGCAGTTGTGGACAACTTAATTTGTTTCTTTATTTCTGATGTTATTATTTAAAGAAATAGTGATTATCTCCATTTTTGATATATTAAGCATGTATCTTTGTTTTTTCAGTCCTGAACAAAAGGTATTTCTCTCAGCTGTGTTGAAGATAATTAAGTCCTGGAGAGGAACATGATATAAAATTCACTTGTTATAAATCTCAGTTTGGTGTTGCATTGTGTCCAGTCAAAGCAGCATCCACAGCGCTCTCTTATGTGGATAACTGTGTGTGTTTGTCTACATATATGTGTGTGTATATATATATATATACACACGTATATATACACACACATAGTATATGTATATTATATATAATATTTAAATCATTCAACTTGCCTTAGATGACATCTCATATATTAGATGCCCAGTCCAAGACTGAATTCTGAAATATGAGTTCTGAAGCAAAAGCATTAGAAATGACTTGGTAGCATCCGGATACCTTAAGAAAATGGGGCAACAGAAGAAATCAGTGGGCATGTGCTTCTGTGATACTAAGTCTGAAGACTGAAATCTCATTTGTGTTTGGAATTTGAAACATGATCTTATATCCTTTGTAACAAGCAAAGTGTAGTATGGAAGTGATTTTTCCTAGCTTACAAATAACTGATTCACTCACAATTTGTATGTCATTCATTCTTTTATAACAG
Seq C2 exon
CTGGTTCCAAAATATTGGTGAAGGATCCCAGACCAGCTTTGGGGACGCCAAGTCCCAAACTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111:ENSGALT00000025958:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]