GgaINT0103006 @ galGal3
Intron Retention
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:138990371-138990636:-
Coord C1 exon
chr2:138990620-138990636
Coord A exon
chr2:138990535-138990619
Coord C2 exon
chr2:138990371-138990534
Length
85 bp
Sequences
Splice sites
5' ss Seq
AACGTTTGT
5' ss Score
-1.17
3' ss Seq
TGAAACATTTTTGATGTCTGTAT
3' ss Score
-5.83
Exon sequences
Seq C1 exon
GAGAGAGTAGATAAAAC
Seq A exon
GTTTGTATTTATAAGATTTTTTTTGGATGTTTGACTTCATAAGCACTAAATGTTGCAATGTGTATTGAAACATTTTTGATGTCTG
Seq C2 exon
TATAGTTCCTGATGATGTATTTGCCCAAAATTATATATGGAAAGGATCTTACAACTACAAAAGCAAGAAACAACCCATGACTTTGACAGTCACCAGTTTTAATGCAACTTCAGGAAGAGTAAATGCAACGCTTACAAACAGCAATATGGAATTGTTGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111:ENSGALT00000036594:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]