GgaINT0103684 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79339146-79340587:+
Coord C1 exon
chr1:79339146-79339314
Coord A exon
chr1:79339315-79340502
Coord C2 exon
chr1:79340503-79340587
Length
1188 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
CTCCTTTGATTTTGCTGCAGTGC
3' ss Score
6.8
Exon sequences
Seq C1 exon
GACCCAAAGAAAAACCGTTTGTACCAGTGGACAAAGGCTGAGTTAAAGGAAGGGTTAATCCAGCTCTCTTTCAACCTCACTACTGAGCCCATTCAAGGGACTTACGCAGTGGTGGCACAGAAGGCTTTTGGGAAGACAATCCATCATCCCTTCTCTGTGGAGGAGTATG
Seq A exon
GTAATTGTTGCAGCAGTTTCAGTTTCCTAGCAGCTATTCCAGTAGGGGCATGAAAGAGGAATTGGACAGGGTGGTAGATATGATCAAGATGTCCAGCAAGGCTGGAAAATATCTGTTTTCTCCTTCATAAGCATCATCTGTTCTGGAGGAGTGAAGACAGAAGGACTTGAGCAACCCATCTCTACTCCTTCCTAAAATCCAGGCCATGCAGTGCCCTTATCAACAAGGCTTCTAGCAGGAGCATGTATGCTTATAGAAGTTTGTGTTGGTGACCAGTGGCTGTACTTCCTTTCAGAGGTGATTGAAGTTACAGTCTCATCTTCAGCTGGTTACACGCGTTAAGTGTCATACTCTGAATCTAGATCTCCCTCAAGTTGGAAAGTTCTGACCTTCTGGTGTAGGCTGGGGCTGTAAATCTTTCCAGTCTTCCTCCACAAGCCTCTCATGATGCCTCAGTGCTTTCTCTGGTGATCTCATTCCTGTGTCAGTCCAGTCTGCTTGGCTAGGAAATAGAATCCTAGTACAAACTTGCAGATGGCTCCTACTCCCTCTTGACATCACCTCCAGTTATCACTCCACAACACCTCAGCAAGTCAACTGCAGCCTGCACTACATGGTCTGCCATGATCATAAAGCCCAGGTGAGCCTTCTGGAAGCTCACTGTCCTCTTTAATTTGCATGGCTGCCCTGAATTTCTCCTAGTTCTCCCAAGATGGTCACTGTCCATGACCTCTCCTGCAGCAGGATTTGGATGTGAGGTCATCTTGTGGTAAGTTAGCAGAGGAGCTACTGGGTCATTCCTATTTTCAAGACTGGTAAGGTCTATGTGCTTTGGAAATGCAGAGATCAGGCTGCAGTCCCATCTTTAAATATTGGTGAGAAACCTTTGACCGAACTCTGTATCATACTGCTGTGAGACTGATAACACTTCTGTTACCTAAGGAGCTGCTTTATTTTAGTAGATAGTGTCATAAGCCTGTTTTCTTATCTGTCACAGAGGCTGGCTGAATGCCAGTGGTTTTCATTGACTTCAGTGGGACGTGTAGATGACACTGGCCACAAAAATCTGATAGCTTGGATGCAAAACGCTTTCAGAACATTTGTAAGAATAGCCCTAGAGTGGCCTTCAGATGTCATTCTTATGTTATTCCCCACCACATAAACTTTTCTCCTTTGATTTTGCTGCAG
Seq C2 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAAAGAAAAACCGTTTGT
R:
AGACCACAAACTGTCACCTTCA
Band lengths:
254-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]