HsaINT0135691 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9352960-9353656:-
Coord C1 exon
chr12:9353488-9353656
Coord A exon
chr12:9353045-9353487
Coord C2 exon
chr12:9352960-9353044
Length
443 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
CCTATTATCTCTATTAACAGTGC
3' ss Score
7.15
Exon sequences
Seq C1 exon
AACCCAAGAAGAAATCGAATTGCACAATGGCAGAGTCTCAAGCTAGAAGCTGGCATCAATCAGTTGTCCTTTCCCCTCTCATCAGAGCCCATTCAGGGCTCCTACAGGGTGGTGGTACAGACAGAATCAGGTGGAAGGATACAGCACCCCTTCACCGTGGAGGAATTTG
Seq A exon
GTATGGATTATGGAAGATGAAAAAGGCATAACATTTTGGTTCCTAGAGTGTGAGCTCACTTAGATCCTTTGAATTTCCTGTAGATATGTTGAACTTGCAGTAGAGTCAGACTTACTGCTTCTAAGACCATTAGGACGGTGTGAACACAGAAGCTCATAAGAGCTTGCTGATTTTCAGTAGCAAATTACGCTTTGCCAAGTATGAAACTTCTTGTTTCAGTGAAACCACCATCATTTGTTAACGTCACTGAGACCCGCTGTGCTCAAGAAGTCAGTTAGATTCTGCATGAATTGTTAAACCTTACCATCTTAAAGTTGATACATTGGAAAGTAAATCTAACATTCAGAGTGTTATTTTGGGAAAAATTATAGACATACTGAAATTATTTGTATTTCCAATAAATGTTTACCAACCTTCCTTATTCCTATTATCTCTATTAACAG
Seq C2 exon
TGCTTCCCAAGTTTGAGGTCAAAGTTCAGGTGCCAAAGATAATCAGTATCATGGATGAAAAAGTGAACATAACAGTCTGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2),PF077039=A2M_N_2=FE(45.5=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(21.1=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAAGAAGAAATCGAATTGCAC
R:
TCTCCACAGACTGTTATGTTCACT
Band lengths:
254-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)