MmuINT0130102 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128471119-128472202:-
Coord C1 exon
chr6:128472034-128472202
Coord A exon
chr6:128471204-128472033
Coord C2 exon
chr6:128471119-128471203
Length
830 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGA
5' ss Score
8.54
3' ss Seq
TTTTCCTCTATTCCAAACAGTTT
3' ss Score
8.82
Exon sequences
Seq C1 exon
ACTCCCAAGAGGAACCGAATTTTTCAATGGCAAAATATCCATCTGGCAGGAGGACTCCACCAGCTCTCTTTCCCACTGTCTGTTGAGCCAGCTCTGGGTATCTACAAGGTTGTAGTGCAGAAGGACTCAGGGAAGAAAATAGAACACTCCTTTGAGGTGAAGGAATACG
Seq A exon
GTATGAATTGGACAAGTGTAAGGCATATATGATGGTGGAATCCTCAAGGTTACTTCTCCGTATTTGTCTGTGGTATACGCGTGTGTGTGCATGTTGGGGGTGTGGTATGTTCTCACTCCGTGTGTGCATATGTAGATGGGAGAAGTTGACATCAGGAAACCAATCATAAAACATGATTCTCAAAGCTCCCCAGAGCTTCTATGGCAGTCACATAATACGATAAATACCTTTCACACCTACGGGAGAATTTGGAAAAGGAAGGATTCAGCGGGAGGAAGTGGCAAATCACAGAACATGACTAGCAAGTTCTGAAGTGGGCACGGGCTACTCAGAGCATAAGAGAGGAGGGTGTGCAACTTCAGCCAGAGTGGAAGATTCCTGGGAGTCAGTGAATGAGTCTGCAGCCCTTCAGTTCAGTGGACCTATAACCACGTGTCTGATAATGGGGCTGAGGATGTCAGTCAGTTGGAAGAGCTAGCATTTGGTTAAAATGAGAGATGGGGGAGGGAGAGGGAGAAAAACATCAAACTTGAACCCACTGGCCCTACTGTTCCATCAACTAACTGTAGTGGTCTTCAGACTCAGTGATGTTTCACCGGCCTTTGAAATCTCGCACAAAATCAGAGGAGTCTGGGAAATGTAGTCTGGTTTCACCAAGTGGCATGTACAAACAGCTCACAGTAATAAATGACAATATCTCTTTCCTAGTATTGACACTAGAGCTCCTTCTGTGTGATTCTATGTCATAGATTCCTCTAATAAAGTCCACTGGTAATATTTATGAGGTCTCCTACCTACTCTCACCTCCTTTTTTCCTCTATTCCAAACAG
Seq C2 exon
TTTTACCCAAATTTGAGGTGATAATAAAAATGCAGAAGACTATGGCTTTCCTGGAAGAGGAACTTCCTATAACTGCTTGTGGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCAAGAGGAACCGAATT
R:
ACGCCACAAGCAGTTATAGGA
Band lengths:
254-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: