GgaINT0103692 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75694102-75695982:+
Coord C1 exon
chr1:75694102-75694244
Coord A exon
chr1:75694245-75695832
Coord C2 exon
chr1:75695833-75695982
Length
1588 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AATTTTTCCTATGGCTGCAGGTG
3' ss Score
7.83
Exon sequences
Seq C1 exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
Seq A exon
GTAAGTGACCACTTGTTTGAGAGAGTAGTTACACTATAGCCTGGCCACATATATATACATATATGTATGTATATTTTAATTTAGCCTGACCAAGCTCATTTATTTAGATTTACTAACACTGAACAAACCACCAATCAATTGTCCTAGGTGGTTTCTCTGCCCAAACCCAGTAGGCGCATCTAATACTTGCAGTATTTTTCAACTCCTATGTATGTCATCTTGTCGTTGTAATTTCTGTTCTATGTCAATGGAGCTAAGCCTTGCTTAAACCTGCTATCTGTAGTGAATGAAGAAGTTTAATAGCGCTAGTGAGACTGAAAGAGATGAAAGAGGGCAGAAAAATAAAGCTGCCTGTGAACATGTGGACCATGATTCTGCTATGGCCCCAAATATTCTTTATGCAGAATAGTAAAGTGATGTATACAAAGCCCTAAGTTGCTCAGTAAAACTTAAAAATAGTAGAAAGGCCCTGCTAAAAGCAAGTGCCTTGTCTCACTAAAAGCCAAGCTAAATGAGTTCTTGAGATTGATTTCACTGTAAGACATTGGATACATGAATTTTATTTATATTTTAGATGCCACTTTACATGCTGTATTAATATCTGGTCAGACATCAAGTACCAAGTAATATATGTGCTTAGGTATTGCTTTCCTCTCCGAAAGCACCTTGGGTACAAAGCTGATGTCAGTCTATCTAGGACAGTCTTTGGGCCATCTCTGTCTTAGTCATTTTTTTCTAGTAGCAAGCTTGCTAGATTCCTTTTTAGGTCATTTCCTTAAGGATACTGTTTTTGCATTCTTAAGGTTGAGACCACCTTGGGAGAGATAGCGAGTGTCAGCAAAAGGCATGCCATGGTCCAGCTGGGACATGAGGGAGACTGGCAGCTAGTGCTGTTTTTCCAGGGAACATGTTCACTCTAAAAATATTTTGATTGCTGTATGTCACAAAAGGGTTTTGTATGGCAGAGAACAGAGAAAATCTATGCAGGGCAATCGTGTTATTGTAAAATCATGTGAGATAAAGATGAAAGCAACTTCTGCTAGCAGAACTTTGCAGAGCAGAGTTTACTATGTGGTCATTTGAGTTATGAGTTAGATTCTGAGGAAGCTACACTAATTTGGCTAGCGTCAACAACAAACCAGTTCTTCAGAACCATTACCAGCCAGTATATATTACAATATTGCTCCAAGACATCACTGCTTTTTATGTTATGAGAGAATCTGCCAAGCAAGATCATTGCAGGCAATTTCCACAGGCAATGTCTGGATGCAGCACAGAGACTGAACTTCGTTCAAGACCAGCTGCCTGAACAGATCTGGCCACTATGTGGAATTATATCAATGTTCATAGTGGCCGTAAAACCCCCAAATGCCTTAACAATCACAAACAATTTTGATAATTAAATTTCTAAGAACTTCTAGGGCTCGTTTCTCTACCACTTTGAGAAGGAAACCTGCTTATGCAGTAGCACAGGAGGGATGTACGCGTGTGCAGATGTGTGTGGGATTCATAAGGTTGGGACTGATGCACTCAACTGGCATCTTGCTAAGTTAGGGCATCTGTAACATAATTTTTCCTATGGCTGCAG
Seq C2 exon
GTGGGCTTGAGCTTCTCTTCTTCTGAAGGCCTGCCTTCTTCTGACACTCACTTACTGTTCAGAGCCTCCCCAAAATCCCTTTGTGCTGTCCGTGCTGTGGACAGTAGTGTTCTACTCATGAAGCCTGAAGCTGATCTGTCACACAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.0=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(26.5=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGGGGTCTTCATACTACAGC
R:
TGTGACAGATCAGCTTCAGGC
Band lengths:
286-1874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]