GgaINT0103696 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79353518-79354176:+
Coord C1 exon
chr1:79353518-79353635
Coord A exon
chr1:79353636-79353947
Coord C2 exon
chr1:79353948-79354176
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTCTCTGTCCCTCACCAGCTC
3' ss Score
9.56
Exon sequences
Seq C1 exon
AATTATCAGCCCTACAGTCAAATAGAATCCATGAAACATCCAGCACTCCTGAAGAGGTGACAGAGACAATCCGAAAGTATTTCCCAGAAACATGGATTTGGAGTTTAGTATCTATAAG
Seq A exon
GTGAGTGATTTGGGCAGATTCCTTCCTTACCTTTATAATGAAAGGTGCTTCATAAGATGAAAATATGAATCCCGTGTTTTCCAAGCCTTTTCAAATACAAGAAGTCCTTAATTGTTTGCAGAAATCACTTGAAAATTGTTGGAGATGGAACTTCCTCTGACTGTGGTTAGGTTTGTCCAGAATGTAGTAGTGAGTTTGGAAGAAAATGTGGTGCCCTATGGTGAATACTATGCCCCCTCATTCACAAAGTCATTACTGTTCAGAAGCTGACAGATAATCACCCTTCTGTCCTTTTTCTCTGTCCCTCACCAG
Seq C2 exon
CTCTGAGGGAAACGCTGAACTAGATGTGACCATCCCTGACACCATCACTGAATGGAAAGCCAGTGCATTCTGCATGTCCCCAGACACAGGCTTTGGCCTGTCACCAACAGTGTCCCTCAGAGCCTTCCAGCCTTTCTTTGTAGAGCTCACCCTGCCTTATTCTGTAGTGCGTGGTGAGGCCTTCACGCTGAAAGCTACTGTTTTCAACTACCTGACAGCCTGCATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=22.5)
A:
NA
C2:
PF0020717=A2M=FE(83.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCCTACAGTCAAATAGAATCC
R:
TCTGATGCAGGCTGTCAGGTA
Band lengths:
342-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]