DreINT0137915 @ danRer10
Intron Retention
Gene
ENSDARG00000093780 | si:ch211-212c13.6
Description
si:ch211-212c13.6 [Source:ZFIN;Acc:ZDB-GENE-131119-8]
Coordinates
chr15:21037289-21037796:-
Coord C1 exon
chr15:21037610-21037796
Coord A exon
chr15:21037515-21037609
Coord C2 exon
chr15:21037289-21037514
Length
95 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AAATCCATATTATTTTTTAGAGA
3' ss Score
5.83
Exon sequences
Seq C1 exon
TTCACAATAATAGTAGTGATGTATCATTAGGTGCAGGAGCCCTTATTCCAGCAAGAGGTGGAGTCGTAGCTGAAGCTGAAAGACTTATACCAAGCCCACTTCCAACTTTGAGCATCTCTCTCTTGCCTGAGGAGACAATTCGCACATTCTTTCCAGAAACTTGGATCTGGGAAATTGTGGAGGTTGG
Seq A exon
GTGAGTAAATAATGGACTCAAAAGTATGAAGATGCTTATCAGGTTTTTTGTTTGACTGTTAAACAAGATATTGTTAAATCCATATTATTTTTTAG
Seq C2 exon
AGACTCTGGATCAGCTGAGGTTCCTGTCACAGTTCCTGACACCATCACATCTTGGGCGACGGAGGCCTTCTGTCTGTCCTCCACAGGTCTGGGTTTGGCTCCTCCTGCTAAGCTGATAGTTTTCCAGCCCTTCTTCCTGGAGCTCTCTCTGCCTTACTCCATTGTTCGTGGGGAGATCTTTGAGCTCAAGGCCACTGTCTTCAACTATCAGTCCAAGTGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093780:ENSDART00000137386:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTGAGGAGACAATTCGC
R:
GCTTAGCAGGAGGAGCCAAAC
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]