MmuINT0102579 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121823633-121824638:+
Coord C1 exon
chr6:121823633-121823810
Coord A exon
chr6:121823811-121824409
Coord C2 exon
chr6:121824410-121824638
Length
599 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACACACTCTCTCTCTCCCAGCTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
CACCTCGTGTGGAATTTGATCTTGCATTTACCCCTGAAATTTCTTGGAGTTTACGCACAACATTGAGTAAAAGACCTGAAGAGCCACCACGTAAAGATCCATCATCGAATGATCCACTTACAGAGACCATTCGAAAATATTTTCCTGAAACCTGGGTCTGGGATATAGTCACAGTAAA
Seq A exon
GTAAGTGATTTCCATTTGTATTATTTGAGCTGGGTATAATTTTTCTGTGTTTTCTTATATTTCCCAAATAAGTTTTATCATAAAGCAAGGAAATTGGTCATTTAGAAAACCATAGCATATCAACCCATCAAGTATAAAATACATTTATTTCCATAACTCCCAGGAAATGCACAGAAAAAAATTCATGTACCTGCCTGATAGTTAAAACTTTTCAGGATCACCATATTGAGTAGTAGGTGAAGCAGTCTTACATGGAGCAGATTATGGGACTGCTACATGGGGTAGACCATAGAAGTCATACAACACTTGTATGATATTTTGAAGATGGGAATTCAGAGAATACTTCAAATCTATGTTTAGATTTACATGAACTTATGAAGTTTGAGATGTTGTGGGTCTGTTACTTGAGTTGGAAAAACAAGATTGCTGAAAGACTTTTTATTTTGCCATCTGGAGTCCCTGTTACTCTGTTCCCTCCCTATCACTCCCTTGAAGGACTAAAGGAAAGGGTTTGTCACACTCAGAGTCACCATCTCAGAGATAATTAATTCATGGGCTCACTTTCTGTGCTTTACACACACACACTCTCTCTCTCCCAG
Seq C2 exon
CTCCACAGGACTGGCTGAAGTGGAAATGACTGTCCCTGACACCATCACTGAATGGAAGGCAGGAGCTCTCTGCTTGTCCAATGACACTGGCCTTGGCCTCTCTTCTGTGGTACCTCTCCAAGCCTTCAAGCCCTTCTTTGTGGAGGTCTCATTGCCCTATTCTGTGGTCCGTGGAGAAGCCTTCATGCTCAAGGCCACTGTGATGAACTATCTCCCCACAAGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=15.0)
A:
NA
C2:
PF0020717=A2M=FE(83.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTGTGGAATTTGATCTTGC
R:
TCCACGGACCACAGAATAGGG
Band lengths:
351-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: