HsaINT0135669 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9317735-9318798:-
Coord C1 exon
chr12:9318648-9318798
Coord A exon
chr12:9317964-9318647
Coord C2 exon
chr12:9317735-9317963
Length
684 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TCACTTGCCCTCCTCCCCAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
CAGGTCTAGGAGTAGTAGAGAGACCATATGTTCCTCAATTAGGCACATATAATGTGATACCCTTAAATAATGAACAAAGTTCAGGGCCAGTCCCTGAAACGGTGCGAAGCTATTTTCCTGAGACTTGGATCTGGGAGTTGGTGGCAGTGAA
Seq A exon
GTAAGTAACTTTACTTTCCTCCATTTGCTGGAGGGGAGGGAATGTGGTTCCTCCAACATTTTCAATTCTAAGACAATCTTCCTGAAAAGTTCTGAATAATTATCTTAACCTCTTCCTCTTTAGGATAGACCTAAGTAAAATGCGCAATTGCATAGGCTCATTAATACAATTGTCTCAGTGCTGAGCAATTCTAAAATAATTATTTCTGATACTGTCAAATAGTAGACATGAGAACTATAAATATTCAGTTCTATATATACTGCTTAATGTCGTTCAGGGAGCCTTCTGTAAATATCAGGGCTGGAGCAGGCACATAAACAAATCAGGCTACATTAATCCAGTGGTCTAATTGTTGGTCATGATTCTTAAAAATGCTTATTTATGGGATTATACAATAGCAAGGGAAGTTAAGGACTAAAATGAATCGCAATTCAAATATTTTTATTCAAAGTACAGACATGTGGGATATGATCATTTGTTGATAAGGGGGAGAGGTACCATTCAGTGGCTTTCATTTTCCCAACTCAGATCCCAGGACATAATCTAGTGTTCACACGAATGCACACTCGCATATACCCTTAAGTGGATTCAGTTCTTGACGTTAGCTTTATGCATATTAATTCTCACTTGAGAAAAGGTGGCTTACATTCATTATTTCTGTTCTTCACTTGCCCTCCTCCCCAG
Seq C2 exon
CTCATCAGGTGTGGCTGAGGTAGGAGTAACAGTCCCTGACACCATCACCGAGTGGAAGGCAGGGGCCTTCTGCCTGTCCGAAGATGCTGGACTTGGTATCTCTTCCACTGCCTCTCTCCGAGCCTTCCAGCCCTTCTTTGTGGAGCTCACAATGCCTTACTCTGTGATTCGTGGAGAGGTCTTCACACTCAAGGCCACGGTCCTAAACTACCTTCCCAAATGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(10.1=17.6)
A:
NA
C2:
PF0020717=A2M=FE(83.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTAGGAGTAGTAGAGAGACCA
R:
GTTTAGGACCGTGGCCTTGAG
Band lengths:
358-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)