GgaINT0103705 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79360648-79361626:+
Coord C1 exon
chr1:79360648-79360722
Coord A exon
chr1:79360723-79361460
Coord C2 exon
chr1:79361461-79361626
Length
738 bp
Sequences
Splice sites
5' ss Seq
ACTGTATGT
5' ss Score
5.19
3' ss Seq
TGGTGTCTTTATCTCCCCAGCAC
3' ss Score
8.06
Exon sequences
Seq C1 exon
GGTGGAGTGAACGATGAGGTAACACTGACAGCCTACATCACTATCGCACTGCTGGAGATTCCTCTGCCTGTAACT
Seq A exon
GTATGTGTCACCCGAGTCACAGATGGTACTAACCTGCCCCGCTAGCCTCCTACAGATAATTAGGCCCCTTTACATTTTGAAAGAAGAAATTCTGTCTGGATATACTTCCTTTCTTTTCAAGTCCAAGATGGACTGACACTTTTTCTCCGCTTTCCTCCCCTGCCCAGTACTGTCTCTTATACAAACATTTTACTTCATCTTCTTCTAAGTTCTTTTCTGGAGTATCTTGCTTTTGCTCATTTTAAATGGATTAATAGTGAGTTAAATAATATTTAAATTTCAGAAATGACCCAGATGGGTTTTCTACATCCATTAAAAAAAAAAAAAAAACGCTCCTTTTGAGTCAGAGTTGTACATGTCTGTTAGAAGACTCGGATGGGCTTACTGTGTTGATGCAACACACAGTGCAGGGTAAGTCAGGCAGTGAATACTTCCATAGGCAGAAGAATTGGACCTTGCTTCAAACTCTCAATATCCAAAATCATTGAACTGCTGGCAAAAAAAATCACTGTAACAAGATATTTCAGAGAAAAGAAAGGTACAAAATAAAGAGCACTCTTTGGTTACTCATATGTCACATAAGGAAGCAGACCTGGAGGGAAAGGAAAACACAATGGTACAATATATATCGGACGGTGTGGCAGGGTTGTAAAGGGTCCATGGGTACCATACAGTTCCTGTTGTTCTAAGATGGACTTCAGTATGACGTCTTGCCGCCTGGTGTCTTTATCTCCCCAG
Seq C2 exon
CACTCGGTGGTGCGTAATGCTCTGTTCTGCCTGGAAACAGCAGGAAATGGGAAAGAAAATCACGTGTACACCAAGGCACTGCTGGCGTATGCCTTTGCCCTGGCAGGGAAGGAGGAGAAGCGGAAGGAGTTCCTCAGCTCACTTGAAAAGGAAGCCGTCAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.6=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTGAACGATGAGGTA
R:
CCTTTTTGACGGCTTCCTTTTCA
Band lengths:
241-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]