MmuINT0041403 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:122027407-122028840:+
Coord C1 exon
chr6:122027407-122027563
Coord A exon
chr6:122027564-122028659
Coord C2 exon
chr6:122028660-122028840
Length
1096 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
TTATCTTGTTCTCTCAACAGCAT
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTGCTCAAGTCTTTTGCCCAAGCTCGAGCCTTCATCTTCATCGATGAATCACACATCACCCATGCCTTCACCTGGCTCTCCCAGCAGCAGAAGGACAATGGCTGCTTCCGGAGCTCCGGATCATTGTTCCACAATGACATAAAG
Seq A exon
GTGACCTTTTCTGAACTGCTTTTAAGAATGGTGACCTAATAACCACTTAAAGTTAGGTCATGCTACTTGCCATGGGGAGGAAAAAGCCTCTAGGCTGGGACTGTATTTTTTTCATAATGGGGATATGAATGGGAACTTCTATAGAACACGTGGATTGGCCATGAGCAGGGAAGGCATCTTTGATGGGTGTCTCGATGTATATTCCGCTGGCCTCACTCATTCTTGTTTGGAGGGGGGAGTAGATGATGAAATGACCCTCTCTGCCTACATAACCATGGCCCTTCTGGAAAGTTCACTCCCAGCCAGGGTAGGTGCCAACATCCCAAACTGGTAAAGACTGTGGCTTTTTACCCTCTCTAAAGCCAAGGGGCAGCATTTTTTTTACACTGCAATGCATTTGTCAGAGTGCATCCATGAGCATCAACTTGCTCATTGAAATCCTGTATGTGTTCCAAAAATCAACCCAAAAACACAGCACTATTTGTCTGTATATTAAATGGAACATAGTTTATAAAAAGAAATGGCTCCCAACAGATGGAGGAGAGAGAAGACAGATAACCAGTGATAGGAAGGAAATGAGAAATAAAGAAGGGAAGGGGGAAAGGAAGGTAAGGGAGATAATAGGAAGGAAGGGAGGGAGGGAGAAAAGAAGGGATGAGAGAGGGGAAGAGAGAAAGGGAAGAAGGGAAGAGGGGAAGAGGGAGAGAGGAAAAAGGAGAGGGAGGGAGGGCAAGGGAGAGATGGAGCAGGAAGGAGAAAGAGAAAGAATGGGGAGGAGGAAGGGAGGGAGGAGGAAGGGAGAGAGGAGAAGGGAGGGAGAAGGGGAAGTAAGGAGAGAGGATGGGAGAGAAGAGGAAGTAAGGTAAGGAAGAAGAAAGGAAGGGAGTGAGGGAGATGTAAGGAGGGAGAGAGAGGTAGGGGAATGTGAGGGAGGGACTGAGAGAAAGCAAATGAGGTAGGGAGGGAAGAGAAGGGAGGGGAGGAGAGGGAGGGAGGATTGATTTGAAAAGCATAGCCTCCTGAAGCCTCCATTTTTGTCCCAGGGCCTGCTAGGACCCTTTTTCACATAGTTCAGTTTATCTTGTTCTCTCAACAG
Seq C2 exon
CATCCTGTTGTCTCCAAAGCCCTGAGCTGCCTGGAGTCTTCCTGGAAGACCATAGAACAAGGGCGAAATGCCAACTTTGTGTATACCAAGGCACTGATGGCCTATGCTTTCGCTCTGGCGGGAAACCAGGATAAGAGAAATGAAATCCTGAAGTCACTTGATGAGGAAGCTATAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTTTGTGCTCAAGTCT
R:
CTTCTTTTATAGCTTCCTCATCAAGT
Band lengths:
334-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: