GgaINT0103711 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79365235-79365850:+
Coord C1 exon
chr1:79365235-79365303
Coord A exon
chr1:79365304-79365747
Coord C2 exon
chr1:79365748-79365850
Length
444 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCATCACTTCCTTTTCCCAGCTG
3' ss Score
7.36
Exon sequences
Seq C1 exon
CTGGCACACCACCAAGTTATTGAGCGTACGGAGTTCAGTACCAACCATGTCTTAGTGTATGTGGAAAAG
Seq A exon
GTGAGTCTCCATTTGGGGCTAGAATGGGACAGAAAAACACAAGCCTTGTGGACGTTTGGCCACCCAAGGCAAAAGACACGGGTCTCAAAACTGCCTTGGATCTGATAAAAATAGGAATGAATCTTATAGTGACTTTTGCTGACCTCAGAATTCACTGGTACCTTCCTCACAGCCCTCGGCAGGTTTTCCCTCTGGGCCTGCATATGGATCAGCCTACACCTGTCCACCAGACACGAGCTCCCCCAGCGTGGGGAAAGGCCCCGGGGTTTCCCCTTGTCCCTCAGCCAGGCCTGCTGAGGGACACGCTCACACGCACACACTCCCAGCGCCCAGGGCACTACTGGCAGCAAGAGCACTAGTGGCAAGAGTTCAATGAGGAGACAGCAGGAGAGCCCAGGGCAGACGCAGAGCAGACACTCAGCCTCCATCACTTCCTTTTCCCAG
Seq C2 exon
CTGAGCAACGTGACCTTGAGCTTCTCCTTCACGGTGGAGCAGGACATCCCTGTGCAGGGCCTGAAGCCAGCTCAGGTGAAGGTGTACGATTACTATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.0=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]