GgaINT0103739 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79378178-79380090:-
Coord C1 exon
chr1:79379922-79380090
Coord A exon
chr1:79378263-79379921
Coord C2 exon
chr1:79378178-79378262
Length
1659 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ATTTTATGTCTCCTATCTAGTGC
3' ss Score
7.84
Exon sequences
Seq C1 exon
GATCCCCAGAGAAACCGTGTGTATCAATGGCAAGGGGTAGAACTTGAGACTGGCCTTATACAGCTCTCCTTCCCCCTCACCTCTGACCCCATCCAAGGCTCCTACAAAATAGTTGTGCAGAAGAACTTCATCTCCCATGTGGCGCACTCCTTCACTGTAGAGGAATATG
Seq A exon
GTAAGGAAAGGAGATATGGACTGCAAGTGGGGCTGACAAAATACCTTCTACTGTGGCCTCCTTAGGATTTGGGATTTCTTAGGAATGACATGGAGAAAACAAGAAATCTGAGTACATAGGCAATGGAATTCAGAGGGGCTGATACAGAAGGATGTTGCTCAGTTTATGGCTTCTTTGCAAATCCCGCCCCAAGTTTGCATTTTTAAGCATGCAGTTTGCTGCAAGTAGCGCTAGATACAAAGCAAGCAATGATAGCATTTTGGTGATCCTGGCTCACAATCTCTGCATCAGTTCTGTTTCTCCACTTGTAGCCCTCTCTCTTTTTCCTGTTCCTCTTGTTTCTGGAAAAGTTTAGAAACTGGTTGGTTGGAGATGAACCATAGCACCCAATTCAAAGAATAACACTCGAGAAATGTTATAACAAAATGAAAGTGGGCTGGCAGTGGAGACTCAATAAGGAGCAATGTGCTGTTTGGGTTACCTACTCTAACCCCTAGTTCTGTTGTGCATAGATGTGTCTCTGCCTAGCTTGTTGCATTTGAGGAGCCTCTTGGCCTGTATTCCATGCTGGTTCTCCCTGGGGCTCCCCTGGCTGTAAACAACTTGACTCACCCAGCACATTGCTCAGAACTCACAGTTTCTGGAAAAAAAAGGATGTGGATCCAAAGAAGACTGTTACTGAAATGCTTGGGACCTGTCTTACCTGGGTCACATTTGGGCACTGAGGCTACTAAGGACATAGGAATGATTGAAACAAACTGGGTTATAGGCTCCACCCAGTCACTGTGACGGATGGGATGTGTCTCCTCCCCAAACCAAAGATATTTCTCTCTTTCCTAGCCTTATGGTAAGCTAGTTTTTCTTTTATTTGTTCTCTAGCCTCATTCCCAGGAATCTCCCATTTTGCTAACTCTTTTACATCTCATGCTGAGCCTTTTGAGGAGTGTTGAAACACTGAGCTGAGGAGGTGTGCAATCTCCCTCCTCTTGTTTCCTTGCACCAGGGAAAACAAAAAAACTTCAGATACAAAGCCCAGAAGCAGTTATATACATATGCCTCACAGTCTGGGCTTAAGTAGCTGAAGGACATAGTGTTGCAGGATGCAGTCTCAAAAGAGAGATGCAACACGTCAGAAACGAAACATGCTTTTTACTTGCCACCCTTCATATCAGATTTATTGCCGCTTCATTCACTTGAAAAAAACTGAGATTTCATAGCAGGCTGGGTTTTCCAGAACAATGGGAAACATCAAGAGAATCAATTATTTGAGCTGTTTCAATGTAGTAAATCACACAGGTGGTGAATGCACTATTTTGACTTTAATTAAAAATGTTATGTCATTAAATATGGAACGCAACATGCAGATAACAGTGTGTCCATCTGAATAGGCATATCTGAGTGATCTATACAGCTGTCTGATGCCAATAGGGTCACACAAGTATGTGCTGCAAATGAGGGAAGGTAAAGGCTACAACCCGCCCTAATTCCCTTTAAAAACAAATGGTGGTGAAGTCTACGGAAACATAAGAAAGGGGTAGCAGAGTGGTACTGAAGACTATTGGTGGTTCATATTAAGCTGATTCTGGCTCTGTGTTTGGGTTTCTGTGCAGTACACAGCTCTTCACTGTTCTCATATCAGATTTTATGTCTCCTATCTAG
Seq C2 exon
TGCTGCCCAAGTATGAGGTCCTGGTGAAGCTGCCTAAGATGATTACTATTGAGGATAAGGAACTTCCAGTGTCCGTCTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCCAGAGAAACCGTGTG
R:
AGACCACAGACGGACACTGG
Band lengths:
254-1913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]