GgaINT0103741 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75735464-75736213:-
Coord C1 exon
chr1:75736090-75736213
Coord A exon
chr1:75735579-75736089
Coord C2 exon
chr1:75735464-75735578
Length
511 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCCAAACCCTTACTTAGGCA
3' ss Score
4.39
Exon sequences
Seq C1 exon
TTACACGTATGGGAAACCAGTCCCTGGTTTGGTGAGTGTCCAAGTGTGCCGGAAATTTTCTCATTCTGCTTCACATTGTTATGGAGAAGAAGGAGAAGCTGTGTGTGAAGAATTCACTAGGCAG
Seq A exon
GTGAGCTACAAGATTAAAATGTAGGAGTCTTTCTTATGAGTAACGGGCAGTGTTGTTTAAATTAAAAATCTGTGACTGTTGGTAGCTGTTAGGACATCAGTGATAACACTGTCCAGGAAAAAGCAGATGTTCTCAGAGGAAGACATTCTTATGAGATCAGTTGTTAAACTGGAAACAGAAATGAAGAAAACCCCACAGCTGAAATCCTGACCTCAGTGAAATTAGCAACTAATTAGCAAGTTAGAAGACAAGGAGGCAATATAATATATGGGTCAAACAAAGAAGGGAGAAAGTACAAAAATGAAGAGAGTAAAGACAATGAAAGAATTAGGAAGACAAACAAAACTGAGGTAGAAGGGAGTTAATAAGGAAAGCTCTGCATGTCTGGAGAACTAAGTATTAAGAACATAAATCTGAAGTTACATGAAAAGAAATTAAGAGCGTTGTATTGAGAGTTTCTGTTCTACAAGGCACCAAGTTTGTTTCTATTTCTCTCCAAACCCTTACTTAG
Seq C2 exon
GCAGATGCTCATGGGTGTGTTTCTGCTGTGGTAAGGACCAAAATATTTCAGCTCCGGCGCAGGGGATATGAGATGAGCATTGAGGTGAAAGGCAAGATCACAGAAGATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCCCTGGTTTGGTGAGT
R:
TGTACCATCTTCTGTGATCTTGCC
Band lengths:
222-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]