GgaINT0103749 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79369735-79370691:-
Coord C1 exon
chr1:79370521-79370691
Coord A exon
chr1:79369835-79370520
Coord C2 exon
chr1:79369735-79369834
Length
686 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TCTTTCTTTTTGTTTAACAGCTG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGTATAACCTTCTCCCAGTCAAGGAACTCCGAGGCTATAGCTTCAAGGACTACTACTTGGAAGAAGAAGATGTAAACCCCTGTGTGTCACTTGACAACATATTACTAAATGGATTCACCTATATACCCATTTCTCCTGATGGTGAAGGTGATGCTTATGACATTCTCAAA
Seq A exon
GTAAGCACCAGACTTTGATTTTTCTTCTTTATTCCTTTTTAGAATATAGTATCCTTTCCTCTTTTTCCCCACCTTGAAGGTCTTTTTAATGAAGTTTGCTGTGAGCTTGCTAATCTGTGTATGCAAGGCAATAGTCCCTGCCTCTGTATAGCCCATTGCTGGTACCTAACTTCTCCTCTGAGCCATTAAAACCTTGAGGGTTCTCCTCAATGCTAGTGCAGAATTCTGTGAATGGGCTCAAATAAGGAAACAGTCATGAGTAGTGGCCTAATATCAGAAATCCCTTCCTCAGTCATGCAAGTTCTCTATCTGGAGAGAGAGTGGTTTAATAAAGTTCCAGTTACTGTAATAACCCACAAAAATACCCATCTAAAGAGTCCTGCTTGTAATTTTTTGTGTACTTTCAATTCAATGCTTTTCACACACCATTTTCACCAGGACAGATGTCTGCAAGGTAGACTATGGTCTTCTAAGCTTTTCGTCTAATCACGTCAGGATTTCGCCTTAGGATGAATATATCATGATAAAGCTTCAATAATGTGGGTTGAACCAGTCTATGTAGCATGTATATACAAGCCTTTACTGTTCTGAACAATTCTGGATAAATCTATGCCTGACATATTAAAAATAGTTTAGTTTCTAAAGCTTGTTTGCTTTTTTTATTGTTCTTTCTTTTTGTTTAACAG
Seq C2 exon
CTGCTAGGCTTAAAAATCTTCACTAGCAACAAAATCCATAAGCCTGAAGTCTGCCAGCATTACACAGCGCATATGATGGAAAGGAGTTACAGTGGTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATAACCTTCTCCCAGTCAAGG
R:
AGAACCACTGTAACTCCTTTCCA
Band lengths:
270-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]