GgaINT0103749 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75728540-75729496:-
Coord C1 exon
chr1:75729326-75729496
Coord A exon
chr1:75728640-75729325
Coord C2 exon
chr1:75728540-75728639
Length
686 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TCTTTCTTTTTGTTTAACAGCTG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGTATAACCTTCTCCCAGTCAAGGAACTCCGAGGCTATAGCTTCAAGGACTACTACTTGGAAGAAGAAGATGTAAACCCCTGTGTGTCACTTGACAACATATTACTAAATGGATTCACCTATATACCCATTTCTCCTGATGGTGAAGGTGATGCTTATGACATTCTCAAA
Seq A exon
GTAAGCACCAGACTTTGATTTTTCTTCTTTATTCCTTTTTAGAATATAGTATCCTTTCCTCTTTTTCCCCACCTTGAAGGTCTTTTTAATGAAGTTTGCTGTGAGCTTGCTAATCTGTGTATGCAAGGCAATAGTCCCTGCCTCTGTATAGCCCATTGCTGGTACCTAACTTCTCCTCTGAGCCATTAAAACCTTGAGGGTTCTCCTCAATGCTAGTGCAGAATTCTGTGAATGGGCTCAAATAAGGAAACAGTCATGAGTAGTGGCCTAATATCAGAAATCCCTTCCTCAGTCATGCAAGTTCTCTATCTGGAGAGAGAGTGGTTTAATAAAGTTCCAGTTACTGTAATAACCCACAAAAATACCCATCTAAAGAGTCCTGCTTGTAATTTTTTGTGTACTTTCAATTCAATGCTTTTCACACACCATTTTCACCAGGACAGATGTCTGCAAGGTAGACTATGGTCTTCTAAGCTTTTCATCTAATCACGTCAGGATTTCGCCTTAGGATGAATATATCATGATAAAGCTTCAATAATGTGGGTTGAACCAGTCTATGTAGCATGTATATACAAGCCTTTACTGTTCTGAACAATTCTGGATAAATCTATGCCTGACATATTAAAAATAGTTTAGTTTCTAAAGCTTGTTTGCTTTTTTTATTGTTCTTTCTTTTTGTTTAACAG
Seq C2 exon
CTGCTAGGCTTAAAAATCTTCACTAGCAACAAAATCCATAAGCCTGAAGTCTGCCAGCATTACACAGCGCATATGATGGAAAGGAGTTACAGTGGTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATAACCTTCTCCCAGTCAAGG
R:
AGAACCACTGTAACTCCTTTCCA
Band lengths:
270-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]