RnoINT0000061 @ rn6
Intron Retention
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161886927-161887953:-
Coord C1 exon
chr4:161887783-161887953
Coord A exon
chr4:161887087-161887782
Coord C2 exon
chr4:161886927-161887086
Length
696 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTGTGTCTTCCTCTGAAAGAAT
3' ss Score
5.32
Exon sequences
Seq C1 exon
GTGTACAACATGCTCCCGTACGTCCATCAATATGGCTATTTCTACAATGGTCTCAACTTGGATGATGAGAGAGCTGACCCATGCATCCCTCAGAAGGACTTGTTCCACAATGGGCTGTATTATAAACCTACAAGCAATGTTTGGGATGGAGACCTCTCTAATCTTGTCAGG
Seq A exon
GTAAGATCACAGAGGAGTCTGTAAAACATTTCCTCTTGTAGCTTTAGTGGTCATGACCCCGTCTCTCTCACACTACAGATCCTTTCTATACCGTGCTGACAGTATACTCTTTTGAAAAGAGATGTTAATCCTGTTGGCTTTTTTTTTTTTTGCATTTTGCTAAAACTAGGTTATATAGCTAGAATCATGGGAACCCTGAGGAGATGGTATTCGATTTCTTGCAATATATCTTATGTGTCAATAGTTAAGCCAAGAAGATAACTTACATTCTTTATTCCACATAATTGGAGACTGACAGCTACACATGCTCAGGGGCCATGCAAGCATCCTTATGATCAGAATCACTGTGGATGGAGAAGAGGACACTGAATCAGACAGGCTTTAGTTCAAGTCCCAGTTCTGATTAACACACGTGAACTGTATAGACATGCATGTGCATGTGAGCATGCATGTTTGCTGTTAAGACAGTGATGGTGCTGGTTTCTTGTATTCCCTTAAGCATAAATGGAAAAAATGGAAATATTAGCCCATTAATAATAAGAAAAATAGTGGTTATCGGAGACTCGATGTCTGTGATCCTGAATCCTGGCTGCACAGAAAATACGCATAGTTATTGTGTGGTTATTATGACTGTAGCCCTCTCATAATTCACTCTAGAAAGGAATGTATAATTTTTTTTGTGTCTTCCTCTGAAAG
Seq C2 exon
AATATGGCTCTGAAAATCTTTACAAATATCCGTTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCTTTGCTGAGGACATTCAATGACCCAAATGAACGGATAATGATGTACGGTGGTGGTGGTGGTGGTGGCGCACCAGCTGCTTCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247:ENSRNOT00000009557:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACATGCTCCCGTACGT
R:
AGGCAGAAGCAGCTGGTG
Band lengths:
329-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]